Locus 8335

Sequence ID 3L_DroMel_CAF1
Location 21,835,616 – 21,835,711
Length 95
Max. P 0.766631
window13642

overview

Window 2

Location 21,835,616 – 21,835,711
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.57
Mean single sequence MFE -25.58
Consensus MFE -20.38
Energy contribution -20.34
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -1.77
Structure conservation index 0.80
SVM decision value 0.52
SVM RNA-class probability 0.766631
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21835616 95 - 23771897
GGCCACACGCACAGUGUCAGCAAAAAGCUGAACAACAGCCUGUGCUCUCGGCAUCCUGAUAAUAACUUUAAUGAGGCCACUCA-UGUCGCCAAACU
(((.((..(((((((((((((.....)))).))).....))))))..((((....))))...........(((((....))))-))).)))..... ( -27.70)
>DroSec_CAF1 16495 95 - 1
GGCCACACGCACAGUGUCAGCAAAAAGUUUAACAACAGCCUGUGCGCUCGGCAUCCUGAUAAUAACUUUAAUGAGGCCACUCA-UGCCGCCAAACU
(((....(((((((((....))....(((....)))...)))))))...(((.......(((.....)))(((((....))))-)))))))..... ( -24.20)
>DroSim_CAF1 15159 95 - 1
GGCCACACGCACAGUGUCAGCAAAAAGUUUAACAACAGGCUGUGCGCUCGGCAUCCUGAUAAUAACUUUAAUGAGGCCACUCA-UGCCGCCAAACU
(((.((((.....))))..((..((((((......((((..((((.....)))))))).....)))))).(((((....))))-))).)))..... ( -25.90)
>DroEre_CAF1 15332 96 - 1
GGACACACGCACAGUGUCAGCAAAAAGUUUAGCAGCAGCCUGUGCGCUCGGCAUCCUGAUAAUAACUUUAAUAAGGCCACUCACUGCCGCCGAACU
.(((((.......))))).......((((..((.((((...(((.((((((....))))......(((....))))))))...)))).))..)))) ( -26.40)
>DroYak_CAF1 12221 96 - 1
GGCCACACGCACAGUGUCAGCAAAAAGUUUAACAACAGCCUGUGCGCUCGGCUUCCUGAUAAUAACUUUAAUGAGGCCACUCACUGCCGCCGAACU
(((....(((((((((....))....(((....)))...)))))))...((((((.(((........)))..))))))..........)))..... ( -23.70)
>consensus
GGCCACACGCACAGUGUCAGCAAAAAGUUUAACAACAGCCUGUGCGCUCGGCAUCCUGAUAAUAACUUUAAUGAGGCCACUCA_UGCCGCCAAACU
(((....((((((((((.(((.....))).....)))..)))))))...((((...(((......(((....))).....))).)))))))..... (-20.38 = -20.34 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:54 2006