| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,831,632 – 21,831,723 |
| Length | 91 |
| Max. P | 0.637440 |
| Location | 21,831,632 – 21,831,723 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.78 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.40 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21831632 91 - 23771897 ACUUUC-------CCGUGGUAAAAGUUUGCU-UUGCCUAAUGAAACCUGAGCAAAACGCUUAAGGAAAUGCUUGAAAAAUGCUUUUGUUCAGGCUUUAC--------- ..((((-------....((((((.(....))-)))))....))))(((((((((((.(((((((......))))).....)))))))))))))......--------- ( -23.40) >DroVir_CAF1 4230 100 - 1 AUUUUCCUUUC-GGCCAGUUAACAGUUUGCCUUUGCUUCAUAAAACUUGAGCGA-GCGCUUAAGGAAAUGCUUGA--AAUGCUUUUAUUCGUA----GCCAGAGAGUU ......(((((-(((.((........)))))...(((.(......(((((((..-..)))))))((((.((....--...))))))....).)----))..))))).. ( -20.30) >DroPse_CAF1 45910 96 - 1 GUUUUU--GUGUGCUCUGCUAAAAGUUUACU-UUGCUUAAUGAAACUUGAGCGAAACGCUUAAGGAAAUGCUUGAAAAAUGCUUUUGUUCAAAGUUCUC--------- ((....--(((.(((........))).))).-..)).....(((..((((((((((.(((((((......))))).....))))))))))))..)))..--------- ( -17.00) >DroSec_CAF1 12491 91 - 1 ACUUUC-------CCGUGGUAAAAGUUUGCU-UUGCCUAAUGAAACCUGAGCAAAACGCUUAAGGAAAUGCUUGAAAAAUGCUUUUGUUCAGGCUUUAC--------- ..((((-------....((((((.(....))-)))))....))))(((((((((((.(((((((......))))).....)))))))))))))......--------- ( -23.40) >DroSim_CAF1 11162 91 - 1 ACUUUC-------CCGUGGUAAAAGUUUGCU-UUGCCUAAUGAAACCUGAGCAAAACGCUUAAGGAAAUGCUUGAAAAAUGCUUUUGUUCAGGCUUUAC--------- ..((((-------....((((((.(....))-)))))....))))(((((((((((.(((((((......))))).....)))))))))))))......--------- ( -23.40) >DroEre_CAF1 11630 92 - 1 ACUUCU-------CCGUGGUUAAAGUUUGCUUUUGCCUAAUGAAAUCUGAGCAAAACGCUUAAGGAAAUGUUUGAAAAAUGCUUUUGUUCAAGGUUUAC--------- ......-------....(((.((((....)))).))).....((((((((((((((.((.....................)))))))))).))))))..--------- ( -18.20) >consensus ACUUUC_______CCGUGGUAAAAGUUUGCU_UUGCCUAAUGAAACCUGAGCAAAACGCUUAAGGAAAUGCUUGAAAAAUGCUUUUGUUCAGGCUUUAC_________ .................(((((.((....)).)))))...((((.(((((((((((.(((((((......))))).....))))))))))))).)))).......... (-15.40 = -16.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:51 2006