Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,827,672 – 21,827,766 |
Length | 94 |
Max. P | 0.999832 |
Location | 21,827,672 – 21,827,766 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -22.31 |
Consensus MFE | -19.80 |
Energy contribution | -20.16 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.88 |
Structure conservation index | 0.89 |
SVM decision value | 4.20 |
SVM RNA-class probability | 0.999832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21827672 94 + 23771897 CAUGCCA--CUCGCAAUGGCGCAAAAGUUCCUAGACCACUCCAAAAAAGAGAGAAAUAA--AAAAGCACAAAAUUUAUAUGCGCCGUCGCGCAUGCAG ..(((..--..(((.((((((((...(((....)))..((((......).)))......--..................)))))))).)))...))). ( -22.30) >DroGri_CAF1 51106 93 + 1 CAUGCCACACUCGCAAUGGCGCAAAAGUUCCUAGACCACUCAAAAAACAUAAA-----AAAAAGAACACAAAAUUUAUAUGCGCCGUCGCGCAUGCAG ..(((......(((.((((((((...(((....)))............(((((-----...............))))).)))))))).)))...))). ( -17.46) >DroSec_CAF1 8222 93 + 1 CAUGCCA--CUCGCAACGGCGCAAAAGUUCCUAGACCACUCCAAAAAAGAGAGAAAUAA--A-AAGCACAAAAUUUAUAUGCGCCGUCGCGCAUGCAG ..(((..--..(((.((((((((...(((....)))..((((......).)))......--.-................)))))))).)))...))). ( -24.10) >DroSim_CAF1 6868 93 + 1 CAUGCCA--CUCGCAACGGCGCAAAAGUUCCUAGACCACUCCAAAAAAGAGAGAAAUAA--A-AAGCACAAAAUUUAUAUGCGCCGUCGCGCAUGCAG ..(((..--..(((.((((((((...(((....)))..((((......).)))......--.-................)))))))).)))...))). ( -24.10) >DroEre_CAF1 7424 94 + 1 CAUGCCA--CUCGCAACGGCGCAAAAGUUCCUAGACCACUCCAAAAAAGAGAAAAAUAA--AAAAGCACAAAAUUUAUAUGCGCCGUCGCGCAUGCAG ..(((..--..(((.((((((((...(((....)))..(((.......)))........--..................)))))))).)))...))). ( -23.60) >consensus CAUGCCA__CUCGCAACGGCGCAAAAGUUCCUAGACCACUCCAAAAAAGAGAGAAAUAA__AAAAGCACAAAAUUUAUAUGCGCCGUCGCGCAUGCAG ..(((......(((.((((((((...(((....)))..(((.......)))............................)))))))).)))...))). (-19.80 = -20.16 + 0.36)
Location | 21,827,672 – 21,827,766 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -31.01 |
Consensus MFE | -26.52 |
Energy contribution | -26.32 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -3.09 |
Structure conservation index | 0.86 |
SVM decision value | 3.85 |
SVM RNA-class probability | 0.999658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21827672 94 - 23771897 CUGCAUGCGCGACGGCGCAUAUAAAUUUUGUGCUUUU--UUAUUUCUCUCUUUUUUGGAGUGGUCUAGGAACUUUUGCGCCAUUGCGAG--UGGCAUG .(((...(((((.((((((((((.....))))..(((--(((..((.((((.....)))).))..))))))....)))))).)))))..--..))).. ( -28.30) >DroGri_CAF1 51106 93 - 1 CUGCAUGCGCGACGGCGCAUAUAAAUUUUGUGUUCUUUUU-----UUUAUGUUUUUUGAGUGGUCUAGGAACUUUUGCGCCAUUGCGAGUGUGGCAUG (..(((.(((((.((((((............((((((...-----.((((.........))))...))))))...)))))).))))).)))..).... ( -26.76) >DroSec_CAF1 8222 93 - 1 CUGCAUGCGCGACGGCGCAUAUAAAUUUUGUGCUU-U--UUAUUUCUCUCUUUUUUGGAGUGGUCUAGGAACUUUUGCGCCGUUGCGAG--UGGCAUG .(((...((((((((((((((((.....)))).((-(--(((..((.((((.....)))).))..))))))....))))))))))))..--..))).. ( -33.90) >DroSim_CAF1 6868 93 - 1 CUGCAUGCGCGACGGCGCAUAUAAAUUUUGUGCUU-U--UUAUUUCUCUCUUUUUUGGAGUGGUCUAGGAACUUUUGCGCCGUUGCGAG--UGGCAUG .(((...((((((((((((((((.....)))).((-(--(((..((.((((.....)))).))..))))))....))))))))))))..--..))).. ( -33.90) >DroEre_CAF1 7424 94 - 1 CUGCAUGCGCGACGGCGCAUAUAAAUUUUGUGCUUUU--UUAUUUUUCUCUUUUUUGGAGUGGUCUAGGAACUUUUGCGCCGUUGCGAG--UGGCAUG .(((...((((((((((((......(((((.(((...--........((((.....)))).))).))))).....))))))))))))..--..))).. ( -32.20) >consensus CUGCAUGCGCGACGGCGCAUAUAAAUUUUGUGCUUUU__UUAUUUCUCUCUUUUUUGGAGUGGUCUAGGAACUUUUGCGCCGUUGCGAG__UGGCAUG .(((...((((((((((((......(((((.(((.............((((.....)))).))).))))).....))))))))))))......))).. (-26.52 = -26.32 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:50 2006