Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,821,946 – 21,822,082 |
Length | 136 |
Max. P | 0.923867 |
Location | 21,821,946 – 21,822,042 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -21.31 |
Consensus MFE | -15.81 |
Energy contribution | -16.38 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.95 |
Structure conservation index | 0.74 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21821946 96 + 23771897 GUUCAAUAAAACCAGCAUAGAAAUCAAGCCGAAUUCAAUAUUUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUCACGCAAGACAGUAGAUUAAA .............(((((.........(((((((.....))))))).........)))))...((((((((((((......))))))))))))... ( -27.77) >DroSec_CAF1 1989 87 + 1 GUUCAAUAAAACCAGCAUAGAAAUCAAGCCGAAUUCAAUAUCUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUC---------AGUAGAUUAAA ..........(((((.((((((.((.....)).)))..))))))))(((........)))...(((((((((...)---------))))))))... ( -19.20) >DroSim_CAF1 2049 87 + 1 UUUCAAUAAAACCAGCAUAGAAAUCAAGCCGAAUUCAAUAUCUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUC---------AGUAGAUUAAA ..........(((((.((((((.((.....)).)))..))))))))(((........)))...(((((((((...)---------))))))))... ( -19.20) >DroEre_CAF1 1992 95 + 1 GUUCAA-AAAACCAGCAUACAAAUCAAGCCGAAUUCAAUAUCUGGUAGCUUCCUGAUGCUUAGAAUCUACUGCAUCACGCAUGACAGUAGAUUAAA ......-......(((((.........((((.((.....)).)))).........)))))...((((((((((((.....))).)))))))))... ( -19.07) >consensus GUUCAAUAAAACCAGCAUAGAAAUCAAGCCGAAUUCAAUAUCUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUC_________AGUAGAUUAAA ..........(((((.((((((.((.....)).)))..))))))))(((........)))...(((((((((............)))))))))... (-15.81 = -16.38 + 0.56)
Location | 21,821,946 – 21,822,042 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -16.49 |
Energy contribution | -17.93 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21821946 96 - 23771897 UUUAAUCUACUGUCUUGCGUGAGACAGUAGAUUCUUAGCAUCAGGAAGCUACCAAAUAUUGAAUUCGGCUUGAUUUCUAUGCUGGUUUUAUUGAAC ...(((((((((((((....))))))))))))).(((((((.(((((....((.(((.....))).)).....))))))))))))........... ( -27.40) >DroSec_CAF1 1989 87 - 1 UUUAAUCUACU---------GAGACAGUAGAUUCUUAGCAUCAGGAAGCUACCAGAUAUUGAAUUCGGCUUGAUUUCUAUGCUGGUUUUAUUGAAC ...((((((((---------(...))))))))).......((((......(((((.(((.(((.((.....)).))).))))))))....)))).. ( -20.30) >DroSim_CAF1 2049 87 - 1 UUUAAUCUACU---------GAGACAGUAGAUUCUUAGCAUCAGGAAGCUACCAGAUAUUGAAUUCGGCUUGAUUUCUAUGCUGGUUUUAUUGAAA ...((((((((---------(...))))))))).......((((......(((((.(((.(((.((.....)).))).))))))))....)))).. ( -20.30) >DroEre_CAF1 1992 95 - 1 UUUAAUCUACUGUCAUGCGUGAUGCAGUAGAUUCUAAGCAUCAGGAAGCUACCAGAUAUUGAAUUCGGCUUGAUUUGUAUGCUGGUUUU-UUGAAC ...(((((((((.(((.....)))))))))))).......(((((((...(((((....((((((......))))))....))))))))-)))).. ( -23.50) >consensus UUUAAUCUACU_________GAGACAGUAGAUUCUUAGCAUCAGGAAGCUACCAGAUAUUGAAUUCGGCUUGAUUUCUAUGCUGGUUUUAUUGAAC ...((((((((((..........)))))))))).......((((......(((((.(((.(((.((.....)).))).))))))))....)))).. (-16.49 = -17.93 + 1.44)
Location | 21,821,978 – 21,822,082 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -16.46 |
Energy contribution | -17.02 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.28 |
Structure conservation index | 0.76 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.891122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21821978 104 + 23771897 AUUCAAUAUUUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUCACGCAAGACAGUAGAUUAAAUCAGAUUAUUUAUUUGCAUGUUUAAAUUAAACGGAAUUUA ((((...((((((((((........)))...((((((((((((......))))))))))))..)))))))............((((((...))))))))))... ( -24.50) >DroSec_CAF1 2021 95 + 1 AUUCAAUAUCUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUC---------AGUAGAUUAAAUCAGAUUAUUUAUUUGCAUGUUUAACUUAAACGGAAUUUA ((((...((((((((((........)))...(((((((((...)---------))))))))..)))))))............((((((...))))))))))... ( -19.90) >DroSim_CAF1 2081 95 + 1 AUUCAAUAUCUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUC---------AGUAGAUUAAAUCAGAUUAUUUAUUUGCAUGUUUAACUUAAACGGAAUUUA ((((...((((((((((........)))...(((((((((...)---------))))))))..)))))))............((((((...))))))))))... ( -19.90) >DroEre_CAF1 2023 104 + 1 AUUCAAUAUCUGGUAGCUUCCUGAUGCUUAGAAUCUACUGCAUCACGCAUGACAGUAGAUUAAAUCAGAUUAUUAAUUUCCAUGCUUAAAUUAAUCGGAAUUUU ((((...((((((((((........)))...((((((((((((.....))).)))))))))..))))))).((((((((........))))))))..))))... ( -22.50) >consensus AUUCAAUAUCUGGUAGCUUCCUGAUGCUAAGAAUCUACUGUCUC_________AGUAGAUUAAAUCAGAUUAUUUAUUUGCAUGUUUAAAUUAAACGGAAUUUA ((((...((((((((((........)))...(((((((((............)))))))))..)))))))............((((((...))))))))))... (-16.46 = -17.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:48 2006