| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,810,505 – 21,810,607 |
| Length | 102 |
| Max. P | 0.915090 |
| Location | 21,810,505 – 21,810,607 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -17.63 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21810505 102 + 23771897 CCAGCACCACCCAACCAGCCCAGGCA----AACC---ACCCACCCACAACCCACUAACCGCCGACCACAGGCAGUUAACUUUUUGGCACAGAUAGGAAUAUUUUGUGGG .................((....)).----....---.....(((((((.....((((.(((.......))).)))).((.((((...)))).)).......))))))) ( -20.70) >DroSim_CAF1 36053 109 + 1 CCAGCACCACCCAACCAGCCCAACCCACCCAACCACCACCCACCGACAACCCACUAACCGCCGACCACAGGCAGUUAACUUUUUGGCACAGAUAGGAAUAUUUUGUGGG .................................................(((((((((.(((.......))).)))).((.((((...)))).)).........))))) ( -16.10) >DroYak_CAF1 46446 80 + 1 CCAACACCA-----------------------------CCCACUCACAACCCACUAACCGCCGACCACAGGCAGUUAACUUUUUGGCACAGAUAGGAAUAUUUUGUGGG .........-----------------------------...........(((((((((.(((.......))).)))).((.((((...)))).)).........))))) ( -16.10) >consensus CCAGCACCACCCAACCAGCCCA__C_____AACC___ACCCACCCACAACCCACUAACCGCCGACCACAGGCAGUUAACUUUUUGGCACAGAUAGGAAUAUUUUGUGGG .................................................(((((((((.(((.......))).)))).((.((((...)))).)).........))))) (-16.10 = -16.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:44 2006