| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,804,781 – 21,804,879 |
| Length | 98 |
| Max. P | 0.528832 |
| Location | 21,804,781 – 21,804,879 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.81 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -20.18 |
| Energy contribution | -20.57 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21804781 98 + 23771897 CUGCCCGCGUUG-CAUCCGAAUUC-------------GCAGCCAGGCACCUGGUUCAGCUUCGACUGGAGCCGGAGCCUGGGCUGUCAGCUCCUUUGACAUUUUCUUAAUAC ..(((((.((((-(..........-------------))))))((((.((.(((((((......)).))))))).))))))))((((((.....))))))............ ( -33.30) >DroSec_CAF1 24881 98 + 1 CUGCCCUGAUCC-CCUCAGAAUUC-------------GCAGCCAGGCACCUGGUUCAGCUUCGACUGGAGCCGGAGCCUGGGCUGUCAGCUCCUUUGACAUUUUCUUAAUAC ((((.((((...-..)))).....-------------))))((((((.((.(((((((......)).))))))).))))))..((((((.....))))))............ ( -31.60) >DroSim_CAF1 30237 98 + 1 CUGCCCUGAUCC-CCUCCGAAUUC-------------GCAGCCAGGCACCUGGUUCAGCUUCGACUGGAGCCGGAGCUUGGGCUGUCAGCUCCUUUGACAUUUUCUUAAUAC ..((((......-.(((((.....-------------(.((((((....))))))).(((((....))))))))))...))))((((((.....))))))............ ( -31.90) >DroEre_CAF1 31877 98 + 1 CUGCCCCAGUCC-CCUCCGAAUUC-------------GCAGCCAGGCACCUGGCACAGCUUCGACUGGAGCCGGAGCCUGGGCUGUCAGGUCCUUUGACAUUUUCUUAAUAC (((...((((((-.(((((.....-------------...(((((....)))))...(((((....))))))))))...)))))).)))(((....)))............. ( -35.00) >DroYak_CAF1 41272 93 + 1 CUGCCCGCGUCCUCCUCCGGAUUC-------------GCAGCCAGGCACCUGGUACAGCUUCGACUGGAGC------CAGGGCUGUCAGCUCCUUUGACAUUUUCUUAAUAC ..((((((((((......)))..)-------------)).(((((....)))))...(((((....)))))------..))))((((((.....))))))............ ( -31.10) >DroAna_CAF1 36840 102 + 1 CGCCCCUUUUCG-CCUUC---UUCCAAGCAAGGGAGAGAUGCCAAGCACCUGGUAUAGUUUCGACUGGAGC------CUGAGUUGCCAGCUCCUUUGACAUUUUCUUAAUAC ............-..(((---((((......)))))))((((((......))))))....((((..(((((------.((......))))))).)))).............. ( -24.30) >consensus CUGCCCUCGUCC_CCUCCGAAUUC_____________GCAGCCAGGCACCUGGUACAGCUUCGACUGGAGCCGGAGCCUGGGCUGUCAGCUCCUUUGACAUUUUCUUAAUAC ..((((..................................(((((....)))))...(((((....)))))........))))((((((.....))))))............ (-20.18 = -20.57 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:38 2006