| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,804,324 – 21,804,439 |
| Length | 115 |
| Max. P | 0.522182 |
| Location | 21,804,324 – 21,804,439 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.45 |
| Mean single sequence MFE | -37.32 |
| Consensus MFE | -23.55 |
| Energy contribution | -24.50 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21804324 115 + 23771897 AUUAAGUGCAGG-CAGGACACUUGGGGCUGCCAGUGGUUUUACAUAGGUGGCAGAAUUAUGUGUGUGUG----UGUGUACAAACAGGUGGAUGCCCGGACGGGGAUCCCUGGGACUAAGG .....(((((.(-((.(((((.(((..(((((((((......)))...))))))..))).)))).).))----).)))))...((((..(((.(((....))).)))))))......... ( -43.30) >DroSec_CAF1 24420 119 + 1 AUUAAGUGCAGU-CAGGACACUUGGGGCUGCCAGUGGUUUUACAUAGGUGGCAGAAUUAUGUGUGUGUGUGGGUGUGUACAAACAGAUGGAUGCCCGGACGGGGAUCCCUGGGACUAAGG .....(..((.(-((.(((((.(((..(((((((((......)))...))))))..)))...)))).).))).))..).....(((..((((.(((....))).)))))))......... ( -37.80) >DroSim_CAF1 29776 119 + 1 AUUAAGUGCAGU-CAGGACACUUGGGGCUGCCAGUGGUUUUACAUAGGUGGCAGAAUUAUGUGUAUGUGUGGGUGUGUACAAACAGGUGGAUGCCCGGACGGGGAUCCCUGGGACUAAGG ....(((.(...-((((((((.(((..(((((((((......)))...))))))..))).)))).(((.(((((((.(((......))).))))))).)))......))))).))).... ( -40.00) >DroEre_CAF1 31440 110 + 1 AUUAAGUGCAGGGGAGGACACUUGGGG-UGCCAGUGGUUUUACAUAGGUGGCAGAAUUAUGUGUAUG--------UGUACAAACAGGUGGAUGCUCGGACGGGGAUAC-UGGGACUUAGG .((((((.(.(((.(...((((((...-((((((((......)))...)))))........((((..--------..))))..))))))..).)))...(((.....)-))).)))))). ( -28.70) >DroYak_CAF1 40819 112 + 1 AUUAAGUGCAGGGGAGGACACUUGGGGCUGCCAGUGGUUUUACAUAGGUGGCAGAAUUAUGUGUAUG--------UGUACAAACAGGUGGAUGCUCGGACGGGGAUACCUGGGACUUAGG .((((((.(.(((.(...((((((..((..((.(((......))).))..)).........((((..--------..))))..))))))..).)))...((((....))))).)))))). ( -36.50) >DroAna_CAF1 36399 108 + 1 AUUAAGUGCAGGGCAGGACACUUGGGACUGCCAGUGGUUGUACAUUGGGGCUAACA-CAC--ACACA--------CCUGCAGUUAGGUAGAAGCUGAGGCCAGGAUCCCUG-GAUUCUGG .((((.((((((((((..(.....)..))))).(((((((..(.....)..)))).-)))--.....--------.))))).)))).............((((((((....-)))))))) ( -37.60) >consensus AUUAAGUGCAGG_CAGGACACUUGGGGCUGCCAGUGGUUUUACAUAGGUGGCAGAAUUAUGUGUAUG________UGUACAAACAGGUGGAUGCCCGGACGGGGAUCCCUGGGACUAAGG ....(((.(....((((.((((((..((((((.(((......))).)))))).........((((((........))))))..))))))(((.(((....))).)))))))).))).... (-23.55 = -24.50 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:38 2006