Locus 8324

Sequence ID 3L_DroMel_CAF1
Location 21,802,779 – 21,802,878
Length 99
Max. P 0.955313
window13623

overview

Window 3

Location 21,802,779 – 21,802,878
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.88
Mean single sequence MFE -39.62
Consensus MFE -22.38
Energy contribution -22.88
Covariance contribution 0.50
Combinations/Pair 1.23
Mean z-score -2.93
Structure conservation index 0.56
SVM decision value 1.45
SVM RNA-class probability 0.955313
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21802779 99 + 23771897
ACGGUCAAAUAGCU------AAGGGCACUGCACGUACAGGUCGGCAUCCGUGUGUUGACCAAGAAG----GUGGCCAUGCAAAACUUAACAG-------GCCACCAGCGGCAGGCA----
..............------....((.((((.(((...(((((((((....))))))))).....(----((((((.((..........)))-------)))))).))))))))).---- ( -39.10)
>DroSec_CAF1 22732 110 + 1
ACGUCCAAAUAGCU------AAGGGCAAUGCACGUAUAGGUCGACAUCCGUGUGUUGACCAAGAAG----GUGGCCAUGCUAAACUGAACAGUCUCGUGGCCACCAGCGGCAGGCAACAA
..((((........------..))))..(((.(((...(((((((((....))))))))).....(----(((((((((....(((....)))..)))))))))).))))))(....).. ( -45.10)
>DroSim_CAF1 28193 110 + 1
ACGUCCAAAUAGCU------AAGGGCAAUGCACGUACAGGUCGACAUCCGUGUGUUGACCAAGAAG----GUGGCCAUGCAAAACUGAACAGUCUCGUGGCCACCAGCGGCAGGCAACAA
..((((........------..))))..(((.(((...(((((((((....))))))))).....(----(((((((((....(((....)))..)))))))))).))))))(....).. ( -45.10)
>DroEre_CAF1 29558 107 + 1
ACGGCCAAAGAGCU------AAAGGCACUGCACGUACAGGUCGGCAUCCGUGUGUUGACCAAGAAG-------GCCAUGCAAAAUUGAACACACUCUUGGCCAUCAGCGACGGGCAGCAA
...(((........------...))).((((.(((.(.(((((((((....)))))))))..((.(-------((((....................))))).))...)))).))))... ( -33.25)
>DroYak_CAF1 39017 114 + 1
ACGGUCAAAAAGCU------AAAGGCUCUGCACGUACAGGUCGGCAUCCGUGUGUUGACCAAGAAGGUAGGUGGCCAUGCAAAGUUGAACAGACUCUUGGCCAUCAGCGACGGGCAAGAA
.(.(((....(((.------....)))..((.......(((((((((....))))))))).........((((((((.....((((.....))))..)))))))).))))).)....... ( -36.70)
>DroAna_CAF1 35171 116 + 1
ACACUCAAAUGGAAACCAGCGAGAGCUCUGCACGUACAGGUCGACAUCCAUCUGUUGACCAAGAAG----GUAGCCAUGCAAAAUUGAGCAGGCUCUUGGCUGCCAGAGUCAGCUAUCAA
..((((....(....)((((((((((.((((.......((((((((......))))))))......----(((....)))........)))))))))).))))...)))).......... ( -38.50)
>consensus
ACGGCCAAAUAGCU______AAGGGCACUGCACGUACAGGUCGACAUCCGUGUGUUGACCAAGAAG____GUGGCCAUGCAAAACUGAACAGACUCUUGGCCACCAGCGGCAGGCAACAA
............................(((.(((...(((((((((....)))))))))..........(((((((....................)))))))..)))....))).... (-22.38 = -22.88 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:36 2006