Locus 8323

Sequence ID 3L_DroMel_CAF1
Location 21,799,832 – 21,799,928
Length 96
Max. P 0.851536
window13622

overview

Window 2

Location 21,799,832 – 21,799,928
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.80
Mean single sequence MFE -31.90
Consensus MFE -24.45
Energy contribution -24.69
Covariance contribution 0.24
Combinations/Pair 1.18
Mean z-score -1.99
Structure conservation index 0.77
SVM decision value 0.79
SVM RNA-class probability 0.851536
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21799832 96 + 23771897
CUUUCACUCAACCCAGUGAAAGGCGAG-CGAUGGCAUUUAAAGCUUUUUGCUGCGCGGAAAUUCGCAGGAGAUUUCCAUGUGCACAAUCGCGAGCAU
((((((((......))))))))((..(-((((.((((....(((.....)))....(((((((.......)))))))..))))...)))))..)).. ( -33.30)
>DroSec_CAF1 19721 96 + 1
CUUUCACUCAACCCAGUGAAAGGCGAG-CGAUGGCAUUUAAAGCUUUUUGCUGCGGGGAAAUUUGCAGGAGAUUUCCAUGUGCACAAUCGCGAGCAU
((((((((......))))))))((..(-((((.((((....(((.....)))....((((((((.....))))))))..))))...)))))..)).. ( -34.40)
>DroSim_CAF1 25189 96 + 1
CUUUCACUCAACCCAGUGAAAGGCGAG-CGAUGGCAUUUAAAGCUUUUUGCUGCGGGGAAAUUCGCAGGAGAUUUGCAUGUGUACAAUCGCGAGCAU
((((((((......))))))))((..(-((((.((((.....((..(((.(((((((....))))))).)))...))..))))...)))))..)).. ( -36.20)
>DroEre_CAF1 25949 96 + 1
CUUUCACUCAACCUAGUGAAAGGCGACCCGAUGGCAUUUAAAGCUUUUUG-CGCGGGGAAAUUCGCAGGGGAUUUGCAUGUGCACAAUCGCAGGCAU
((((((((......))))))))....((((...(((............))-).)))).......((..(.(((((((....))).)))).)..)).. ( -28.70)
>DroYak_CAF1 35393 97 + 1
CUUUCACUCAACCUAGUGGAUGUCGGCCCGAUGGCAUGCAAAGCUUUUUGUUGCGGGGGAAUUCGCAGGAGAUUUGCAUGUGCACAAUCGCAAGCAU
..((((((......))))))(((..((..(((.(((((((((.(((....(((((((....)))))))))).))))))))).....)))))..))). ( -26.90)
>consensus
CUUUCACUCAACCCAGUGAAAGGCGAG_CGAUGGCAUUUAAAGCUUUUUGCUGCGGGGAAAUUCGCAGGAGAUUUGCAUGUGCACAAUCGCGAGCAU
((((((((......))))))))((....((((.((((.........(((.(((((((....))))))).))).......))))...))))...)).. (-24.45 = -24.69 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:35 2006