Locus 8322

Sequence ID 3L_DroMel_CAF1
Location 21,798,775 – 21,798,884
Length 109
Max. P 0.938232
window13621

overview

Window 1

Location 21,798,775 – 21,798,884
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -29.45
Consensus MFE -19.42
Energy contribution -18.92
Covariance contribution -0.50
Combinations/Pair 1.30
Mean z-score -2.27
Structure conservation index 0.66
SVM decision value 1.29
SVM RNA-class probability 0.938232
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21798775 109 - 23771897
UUCCUUCGGCCACCACGACAUUUUCAGUGGAGCAUUGUUGGCCCCAAUAAUCGGGGUGCCAGCAUCACACAGCAAAAAGGUUAUUGUCAUAUCACUGACCACUAACCAA
........((..((((..........)))).....((((((((((........))).))))))).......)).....(((((..((((......))))...))))).. ( -30.80)
>DroSec_CAF1 18689 109 - 1
UUCCUUUGGCCACCACGACAUUUUCAGUGGAGCAUUGUUGGCCCCAAUAAUCGGGGUGCCAGCGUCACACAGCAAAGAGGUUAUUGUCAUAUCACUGACCACUAACCAA
...(((((((..((((..........)))).))...(((((((((........))).)))))).........))))).(((((..((((......))))...))))).. ( -34.30)
>DroSim_CAF1 24134 109 - 1
UUCCUUUGGCCACCACGACAUUUUCAGUGGAGCAUUGUUGGCCCCAAUAAUCGGGGUGCCAGCAUCACACAGCAAAGAGGUUAUUGUCAUAUCACUGACCACUGACCAA
...(((((((..((((..........)))).))..((((((((((........))).)))))))........))))).(((((..((((......))))...))))).. ( -35.10)
>DroYak_CAF1 34544 87 - 1
UUCAUAUGGCCAUCAUGACAUUUUCAGUGGGUCAUUGUCGGCCCCAAUAAUCGGGGUACCAGUAUCACACAAG----------------UAACA------AACAACUAU
.......((((....(((.....)))...))))((((...(((((.......)))))..))))..........----------------.....------......... ( -17.60)
>consensus
UUCCUUUGGCCACCACGACAUUUUCAGUGGAGCAUUGUUGGCCCCAAUAAUCGGGGUGCCAGCAUCACACAGCAAAGAGGUUAUUGUCAUAUCACUGACCACUAACCAA
.....((((...((((..........))))((...((((((((((........))).)))))))..............(((((.((......)).))))).))..)))) (-19.42 = -18.92 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:34 2006