Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,798,024 – 21,798,114 |
Length | 90 |
Max. P | 0.667119 |
Location | 21,798,024 – 21,798,114 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 69.57 |
Mean single sequence MFE | -15.30 |
Consensus MFE | -6.24 |
Energy contribution | -7.20 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.20 |
Mean z-score | -1.77 |
Structure conservation index | 0.41 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21798024 90 + 23771897 ACAUAAUGUGCCAUAACAGUUUAAUAAACUGUUAUAAUUAAAAUUUCUAAUAGAAAUCUGACUGC---GCGGUAGCGUUAUGACAAAAUGAUG .((((((((((((((((((((.....))))))))).......(((((.....)))))........---..)))).)))))))........... ( -21.70) >DroSec_CAF1 17941 80 + 1 ACAUAAUGUGCCAUAGCAGUUUAAUAAACUGUUAUAAUUAAAAUUGCUAAAAGAAAUCUGAUUGCUAAGGGGUAGCGGUA------------- ........(((((((((((((.....)))))))))..........((((.......(((........)))..))))))))------------- ( -15.70) >DroSim_CAF1 23386 80 + 1 ACAUAAUGUGCCAUAGCAGUUUAAUAAACUGUUAUAAUUAAAAUUGCUAAUAGAAAUCUGAUUGCUAAGGGGUAGCGGUA------------- ........((((.((((((((.......((((((((((....)))).))))))......))))))))...))))......------------- ( -15.92) >DroEre_CAF1 24499 74 + 1 AC----------------GUUUAAAGAACUGUUAUAAUUAAAAUAGCUAUUAGAAAUUGGAUUGCUAGG-GGUAGAAGAU-UUCAAAA-GAUA ..----------------............(((((.......))))).....((((((...((((....-.))))..)))-)))....-.... ( -7.50) >DroYak_CAF1 33922 78 + 1 UCAUGAUGUGAGAUAGCAGUUUAGUAAACUGUUAUAAUUAAAAUAGCAAAUACAAAUCGAUUUGCUAAG-GGUAGAAGA-------------- ...((((.....(((((((((.....))))))))).))))...((((((((........))))))))..-.........-------------- ( -15.70) >consensus ACAUAAUGUGCCAUAGCAGUUUAAUAAACUGUUAUAAUUAAAAUUGCUAAUAGAAAUCUGAUUGCUAAG_GGUAGCGGUA_____________ ............((((((((((...))))))))))..........................(((((....))))).................. ( -6.24 = -7.20 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:33 2006