| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,797,102 – 21,797,208 |
| Length | 106 |
| Max. P | 0.655671 |
| Location | 21,797,102 – 21,797,208 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.19 |
| Mean single sequence MFE | -39.28 |
| Consensus MFE | -25.35 |
| Energy contribution | -26.51 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21797102 106 - 23771897 ACACGGCGAGGGAGUC------CAGAGCCCAG------GACCAAGAACCAAGGGCUUAAGGGCAGAGGGCAGAGCCAGAUUGCCAAAGGCUUCCCUGUCUCGCGGGCAAUUAGUGGAG ...(.((((((..(((------(.((((((.(------(........))..))))))..))))..((((..(((((...........))))))))).)))))).)............. ( -37.70) >DroSec_CAF1 16983 92 - 1 ACACGACGGGGGAGUC------CAGAACCCAG------GACGAAGG--------------GAAAGAGGGCAGAGCCAGAUUGCCAAAGGCUUCCCUGUCUCGCAUGCAAUUAGUGGGG .(((((((((((((((------.....(((..------......))--------------)......(((((.......)))))...))))))))))))..(....).....)))... ( -32.80) >DroSim_CAF1 22423 106 - 1 ACACGGCGGGGGAGUC------CAGAGCCCAG------GACCAAGGACCAAGGGGUUAAGGGCAGAGGGCAGAGCCAGAUUGCCAAAGGCUUCCCUGUCUCGCAGGCAAUUAGUGGGG .(((((((((((((((------...(((((.(------(.(....).))...)))))...(((((..(((...)))...)))))...))))))))))))..(....).....)))... ( -41.80) >DroEre_CAF1 23570 116 - 1 ACACGGCAGGGGAGCCAGAGCCCAGAGCCCAGAGCAACGACCAAGGACCAAGGA--UUGGGGUGGAGGGCCGAGGCUGAUUGCCAAAGGCUUCCCUGACUCGCGGGCAAUUAGUGGGG ......((((((((((.(.((((...((.....)).....(((....(((....--.)))..))).)))))..(((.....)))...)))))))))).(((((.........))))). ( -46.10) >DroYak_CAF1 31858 97 - 1 ACACGGCAGGGAAGCC------CA-------------UAUCCAAGGAUCAAGGA--UUGGGGUAGAGGGCAGAGGCUGAUUGCCAAAGGCUUCCCUGUCUCGCGGGCAAUUAGUGGGG .(((((((((((((((------((-------------.((((.........)))--))).(((((..(((....)))..)))))...))))))))))))..(....).....)))... ( -38.00) >consensus ACACGGCGGGGGAGUC______CAGAGCCCAG______GACCAAGGACCAAGGA__UAAGGGCAGAGGGCAGAGCCAGAUUGCCAAAGGCUUCCCUGUCUCGCGGGCAAUUAGUGGGG .(((((((((((((((..........((((.............................))))....(((((.......)))))...))))))))))))..(....).....)))... (-25.35 = -26.51 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:33 2006