Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,772,009 – 21,772,116 |
Length | 107 |
Max. P | 0.563039 |
Location | 21,772,009 – 21,772,116 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 85.34 |
Mean single sequence MFE | -35.73 |
Consensus MFE | -25.97 |
Energy contribution | -26.28 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.22 |
Mean z-score | -2.37 |
Structure conservation index | 0.73 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21772009 107 + 23771897 CAGCGUUGCGAAAAC-AUCGCAAUCUGAUGCUUUUUAAACUUACCUGUGGCCAAAGGGAUUCCGGCACAUACAUUCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC (((.(((((((....-.)))))))))).................(((((((((.(((..(((((.(.................).)))))..))).)))))))))... ( -38.03) >DroSec_CAF1 683 107 + 1 CAGCGUUGCGAAAAC-AUUGCAAUCUGAUGCCUUUCGAACUUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC (((.(((((((....-.)))))))))).................(((((((((.(((..(((((.(.......(((....)))).)))))..))).)))))))))... ( -41.01) >DroSim_CAF1 683 107 + 1 CAGCGUUGCGAAAAC-AUCGCAAUCUGAUGCCUUUUGAACUUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCGGAACACUUUUGGCCGCAGUAC (((.(((((((....-.)))))))))).................(((((((((.(((..(((((.(.......(((....)))).)))))..))).)))))))))... ( -43.11) >DroEre_CAF1 681 104 + 1 CAGCGUUGCGAAAAC-AUCGCA---UGAUGCCUUUUGAACCUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCUGAACACUUCUGGCCGCAGUAC ..(((((((((....-.)))))---..)))).............(((((((((.(((..(((.(((.......(((....))).))))))..))).)))))))))... ( -37.80) >DroWil_CAF1 2388 108 + 1 UAAUAUUUCAAAUUCUAUUGUAAUCACACUCUAAUCACACACACCUCUGGCCACAAAGAUUCUGGGACAUACAUACGCGAACAGGCCGAACAUUUUUGGCCACAAUAC ...............((((((.......(((.((((.......((...)).......))))..))).................(((((((....))))))))))))). ( -15.94) >DroYak_CAF1 682 107 + 1 CAGCGUUACGAAAAC-AUCGCAAUGUGAUGCCUUUUGAACCUACCUGUGGCCACAGGGAUUCAGGCACAUACAUGCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC .((.(((.(((((.(-(((((...))))))..))))))))))..(((((((((.(((..(((..((.......(((....))).)).)))..))).)))))))))... ( -38.50) >consensus CAGCGUUGCGAAAAC_AUCGCAAUCUGAUGCCUUUUGAACUUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC ....(((((((......)))))))....................(((((((((.(((..(((..(((......)))((......)).)))..))).)))))))))... (-25.97 = -26.28 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:24 2006