Locus 8313

Sequence ID 3L_DroMel_CAF1
Location 21,757,726 – 21,757,846
Length 120
Max. P 0.710887
window13606

overview

Window 6

Location 21,757,726 – 21,757,846
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -43.27
Consensus MFE -39.92
Energy contribution -39.60
Covariance contribution -0.32
Combinations/Pair 1.13
Mean z-score -1.70
Structure conservation index 0.92
SVM decision value 0.38
SVM RNA-class probability 0.710887
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21757726 120 - 23771897
UGGCCGCCAGCUGCUCGCGCUCUAUUCGGCGCUCCUCCUCGAUUUGGCUGGGAGUCAGGGUCUUCUCCAUCUUAUGCUGGAGCCUCUUGGCCUUGAGCUGGCCCAUCAGGUGGUUGUAGC
.((((((((((((((((((((......))))).((.((.......))..))))))(((((((..(((((.(....).)))))......))))))))))))))((....)).))))..... ( -46.30)
>DroEre_CAF1 164 120 - 1
UAGCCGCCAGCUGCUCCCGCUCUAUUCGUCGCUCCUCCUCGAUUUGGCUGGGAGUCAGAGUCUUCUCCAUCUUGUGCUGGAGCCUCUUGGCUUUGAGUUGGCCCAUCAGGUGGUUGUAGU
(((((((((((((((((((((....(((..(.....)..)))...))).))))))(((((((..(((((.(....).)))))......))))))))))))))((....)).))))).... ( -42.60)
>DroYak_CAF1 1762 120 - 1
UGGCCGCCAGCUGCUCCCUCUCUAUUCGGCAUUCCUCCUCGAUUUGACUGGGAGUCAAAGUCUUCUCCAUCUUGUGCUGGAACCUUUUGGCUUUGAGCUGGCCCAUCAGGUGGUUGUAAU
.(((((((((((((((((..((...((((.........))))...))..))))))(((((((...((((.(....).)))).......))))))))))))))((....)).))))..... ( -40.90)
>consensus
UGGCCGCCAGCUGCUCCCGCUCUAUUCGGCGCUCCUCCUCGAUUUGGCUGGGAGUCAGAGUCUUCUCCAUCUUGUGCUGGAGCCUCUUGGCUUUGAGCUGGCCCAUCAGGUGGUUGUAGU
.((((((((((((((((((.((...(((...........)))...)).)))))))(((((((..(((((.(....).)))))......))))))))))))))((....)).))))..... (-39.92 = -39.60 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:20 2006