Locus 8312

Sequence ID 3L_DroMel_CAF1
Location 21,756,994 – 21,757,114
Length 120
Max. P 0.500000
window13605

overview

Window 5

Location 21,756,994 – 21,757,114
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.40
Mean single sequence MFE -31.53
Consensus MFE -24.95
Energy contribution -25.07
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.41
Structure conservation index 0.79
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21756994 120 - 23771897
ACGCAGUAGUAGAUCAUCACAUCAUUUAAAUAAAUAUUCUUAAGUCUAUUGGCUGAUGUUCAUAGCAGAUGUGUCCGAGCUCACAUCUGCAAUGUGGAAUGAGGCAUCUUCGGCGGGCAU
...(((((((((((.........((((....))))........))))))).))))((((((...(((((((((........)))))))))...((.(((.((....))))).)))))))) ( -32.23)
>DroSec_CAF1 42039 119 - 1
ACGAAGUAGUACAUCCUCCCAUCAUUUAAAUAAAUAAA-AUAAGUCUAUUGGCUGAUGUUCAUAGCAGAUGUGUCCGAGCUCACAUCUGCAAUGUGGAAUGAGGCAUCUUCGGCGGGCAU
.(((((........((((.((((.((((......))))-...((((....))))))))(((((((((((((((........)))))))))..))))))..))))...)))))........ ( -32.30)
>DroSim_CAF1 44718 119 - 1
ACGAAGUAGUACAUCCUCCCAUCAUUUAAAUAAAUAAA-AUAAGUCUAUUGGCUGAUGUUCAUAGCAGAUGUGUCCGAGCUCACAUCUGCAAUGUGGAAUGAGGCAUCUUCGGCGGGCAU
.(((((........((((.((((.((((......))))-...((((....))))))))(((((((((((((((........)))))))))..))))))..))))...)))))........ ( -32.30)
>DroEre_CAF1 24499 120 - 1
ACUUAGAAGUACAUCUUUCUAUCAUUCAAAUAAAUAUUGUGUAGGCUAUUGGCUUAUGUUCAUAGCAGAUGUAUCCGAGCUCACGUCUGCAAUGUGGAAUGAGGCAUCUUCGGCAGGCAU
...((((((......))))))((((((...........(..(((((.....)))))..).(((.((((((((..........)))))))).)))..)))))).((..(....)...)).. ( -29.30)
>consensus
ACGAAGUAGUACAUCCUCCCAUCAUUUAAAUAAAUAAA_AUAAGUCUAUUGGCUGAUGUUCAUAGCAGAUGUGUCCGAGCUCACAUCUGCAAUGUGGAAUGAGGCAUCUUCGGCGGGCAU
.....................((((((...............((((....))))......(((.(((((((((........))))))))).)))..)))))).((..(....)...)).. (-24.95 = -25.07 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:19 2006