| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,756,555 – 21,756,675 |
| Length | 120 |
| Max. P | 0.856942 |
| Location | 21,756,555 – 21,756,675 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -36.88 |
| Consensus MFE | -34.35 |
| Energy contribution | -34.35 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21756555 120 + 23771897 AUUCCACGUACUACUCGGAUGCCUGUCUUCUGCAUACGCCUUCGCAAAUUGCAUUGGCUGCCGUCCUCCACGCGGCCAGCAGAGAGCAAGAGAAUCUCGAUAGCUAUGUGACGGAUCUUC ....(((((((((.((((((.(.((..((((((..........((.....))..(((((((.((.....)))))))))))))))..)).)...))).)))))).)))))).......... ( -38.70) >DroSec_CAF1 41599 120 + 1 AUUCCACAUACUACUCGGAUGCCUGUCUUCUGCAUACGCCUUCGCAAAUUGCAUUGGCUGCCGUCCUCCACGCGGCCAGCAGAGAGCAAGAGAAUCUCGAUAGUUAUGUGACGGAUCUUC ....(((((((((.((((((.(.((..((((((..........((.....))..(((((((.((.....)))))))))))))))..)).)...))).)))))).)))))).......... ( -39.10) >DroSim_CAF1 44278 120 + 1 AUUCCACAUACUACUCGGAUGCUUGUCUUCUGCAUACGCCUUCGCAAAUUGCAUUGGCUGCCGUCCUCCACGCGGCCAGCAGAGAGCAAGAGAAUCUCGAUAGUUAUGUGACGGAUCUUC ....(((((((((.((((((.((((..((((((..........((.....))..(((((((.((.....)))))))))))))))..))))...))).)))))).)))))).......... ( -43.20) >DroEre_CAF1 24060 120 + 1 AUUCCACAUUCUACUCGGAUGCCUGUCUUUUGCAUACGCCCUCGCAAAUCGCAUUAGCUGCCGUCCUCCACGCUGCCAGCAGAGAACAAGAGAAUCUUGAUAGCUAUGUGACGGAUCUUC ..(((.(((((.....)))))...(((....(((((.((.(((((.....))....((((((((.....)))..).)))).)))..((((.....))))...)))))))))))))..... ( -26.50) >consensus AUUCCACAUACUACUCGGAUGCCUGUCUUCUGCAUACGCCUUCGCAAAUUGCAUUGGCUGCCGUCCUCCACGCGGCCAGCAGAGAGCAAGAGAAUCUCGAUAGCUAUGUGACGGAUCUUC ....(((((((((.((((((.(.(((..(((((..........((.....))..(((((((.((.....))))))))))))))..))).)...))).)))))).)))))).......... (-34.35 = -34.35 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:18 2006