Locus 8310

Sequence ID 3L_DroMel_CAF1
Location 21,755,098 – 21,755,210
Length 112
Max. P 0.532961
window13603

overview

Window 3

Location 21,755,098 – 21,755,210
Length 112
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -25.70
Consensus MFE -25.92
Energy contribution -25.70
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.23
Structure conservation index 1.01
SVM decision value -0.00
SVM RNA-class probability 0.532961
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21755098 112 - 23771897
CCUUUUUUCUUGGCCGAAUUUCUGAACGCACGUGCUACGCAUUUUUUAACUUUGAGGUGCCUGCAGCAUCAGUCGGCUCAGAGUUGAAUUAAUAUUGUUUUGCUUUUGUUUU--------
..((..((((.((((((....((((..((...(((...(((((((........)))))))..))))).)))))))))).))))..)).........................-------- ( -25.50)
>DroSec_CAF1 40239 120 - 1
CCUUUUUUCUCGGCCGAAUUUCUGAACGCACGUGCUACGCAUUUUUUAACUUUGAGGUGCCUGCAGCAUCAGUCGGCUCAGAAUUGAAUUAAUAUUGUUUUGCUUUUGUUUUUAUUGUAU
..((..((((.((((((....((((..((...(((...(((((((........)))))))..))))).)))))))))).))))..))................................. ( -25.80)
>DroSim_CAF1 42920 120 - 1
CCUUUUUUCUCGGCCGAAUUUCUGAACGCACGUGCUACGCAUUUUUUAACUUUGAGGUGCCUGCAGCAUCAGUCGGCUCAGAAUUGAAUUAAUAUUGUUUUGCUUUUGUUUUUAUUGUAU
..((..((((.((((((....((((..((...(((...(((((((........)))))))..))))).)))))))))).))))..))................................. ( -25.80)
>consensus
CCUUUUUUCUCGGCCGAAUUUCUGAACGCACGUGCUACGCAUUUUUUAACUUUGAGGUGCCUGCAGCAUCAGUCGGCUCAGAAUUGAAUUAAUAUUGUUUUGCUUUUGUUUUUAUUGUAU
..((..((((.((((((....((((..((...(((...(((((((........)))))))..))))).)))))))))).))))..))................................. (-25.92 = -25.70 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:17 2006