Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,753,064 – 21,753,184 |
Length | 120 |
Max. P | 0.833579 |
Location | 21,753,064 – 21,753,184 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.85 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -25.30 |
Energy contribution | -27.80 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.03 |
Mean z-score | -1.90 |
Structure conservation index | 0.76 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21753064 120 + 23771897 UGUAGAUGCUUGUUGCAGAUACUUUCGCAAUGAGUUUUAUUGGUGUCGCUCCGUAGAGAUCGAUAGAGAUCUACGGAUCUCUGGAAAGCAUCUGGCAUGAAGGGAUAACGAUAAGGUAAA .......(((..((((.((.....))))))..)))(((((((.((((.((.(((..(((((..((((((((....))))))))....).))))...))).)).)))).)))))))..... ( -37.30) >DroSec_CAF1 38276 110 + 1 UGUAGAUGCUUGUUGCAGAUACUUUCGCAAUGAGUUUUAUUGGUGUCGCUCGAUA----------GAGAUCUACGGAUCUCGGGAAAGCGUCUGGCAUGAAGGGAUAACGAUAAGGUAAA .......(((..((((.((.....))))))..)))(((((((.((((.((((...----------((((((....))))))......((.....)).)).)).)))).)))))))..... ( -32.70) >DroSim_CAF1 40868 120 + 1 UGUAGAUGCUUGUUGCAGAUACUUUCGCAAUGAGUUUUAUUGGUGUCGCUCGAUAGAGAUCGAUAGAGAUCUACGGAUCUCGGGAAAGCGUCUGGCACGAAGGGAUAACGAUAAGGUAAA ........(((((((((((..(((((.(.........(((((((.((........)).)))))))((((((....))))))).)))))..))))...(....).....)))))))..... ( -39.10) >DroEre_CAF1 20615 109 + 1 UGUAGAUGCUUGUUGCAGAUACUUUCGCAAUGAGUUUUAUUUGUGUCGC-----------CGAUAGAGCUCUACCGAUCAAAGAAAAGCCCCUGGCAUGAAGGGAUAAAGAUAAGGUAAA .(((..(((.....)))..))).........((((((((((.(.....)-----------.))))))))))((((.(((...(.....)((((.......)))).....)))..)))).. ( -24.00) >consensus UGUAGAUGCUUGUUGCAGAUACUUUCGCAAUGAGUUUUAUUGGUGUCGCUCGAUA_____CGAUAGAGAUCUACGGAUCUCGGGAAAGCGUCUGGCAUGAAGGGAUAACGAUAAGGUAAA .......(((..((((.((.....))))))..)))(((((((.((((.((...............((((((....))))))......((.....))....)).)))).)))))))..... (-25.30 = -27.80 + 2.50)
Location | 21,753,064 – 21,753,184 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.85 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -17.27 |
Energy contribution | -17.46 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.28 |
Structure conservation index | 0.68 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21753064 120 - 23771897 UUUACCUUAUCGUUAUCCCUUCAUGCCAGAUGCUUUCCAGAGAUCCGUAGAUCUCUAUCGAUCUCUACGGAGCGACACCAAUAAAACUCAUUGCGAAAGUAUCUGCAACAAGCAUCUACA ...........((.....(((..(((.((((((((((.(((((((.((((....)))).))))))).....((((...............)))))))))))))))))..))).....)). ( -31.36) >DroSec_CAF1 38276 110 - 1 UUUACCUUAUCGUUAUCCCUUCAUGCCAGACGCUUUCCCGAGAUCCGUAGAUCUC----------UAUCGAGCGACACCAAUAAAACUCAUUGCGAAAGUAUCUGCAACAAGCAUCUACA ...........((.....(((..(((.((((((((....((((((....))))))----------....))))).................(((....)))))))))..))).....)). ( -22.30) >DroSim_CAF1 40868 120 - 1 UUUACCUUAUCGUUAUCCCUUCGUGCCAGACGCUUUCCCGAGAUCCGUAGAUCUCUAUCGAUCUCUAUCGAGCGACACCAAUAAAACUCAUUGCGAAAGUAUCUGCAACAAGCAUCUACA ...........((.....(((..(((.((((((((....((((((.((((....)))).))))))....))))).................(((....)))))))))..))).....)). ( -28.00) >DroEre_CAF1 20615 109 - 1 UUUACCUUAUCUUUAUCCCUUCAUGCCAGGGGCUUUUCUUUGAUCGGUAGAGCUCUAUCG-----------GCGACACAAAUAAAACUCAUUGCGAAAGUAUCUGCAACAAGCAUCUACA ................((((.......))))((((....(((.(((((((....))))))-----------))))................(((....)))........))))....... ( -19.40) >consensus UUUACCUUAUCGUUAUCCCUUCAUGCCAGACGCUUUCCCGAGAUCCGUAGAUCUCUAUCG_____UAUCGAGCGACACCAAUAAAACUCAUUGCGAAAGUAUCUGCAACAAGCAUCUACA ......................((((((((.((((((..((((((....))))))................((((...............)))))))))).))))......))))..... (-17.27 = -17.46 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:16 2006