Locus 8308

Sequence ID 3L_DroMel_CAF1
Location 21,750,752 – 21,750,872
Length 120
Max. P 0.681080
window13600

overview

Window 0

Location 21,750,752 – 21,750,872
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -50.37
Consensus MFE -47.45
Energy contribution -48.23
Covariance contribution 0.78
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.94
SVM decision value 0.31
SVM RNA-class probability 0.681080
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21750752 120 - 23771897
GGUGGCUGAAUGGGGCAAAUGAACUGUACAGCGGCUCCGAGUGACUGCGAAAGAUCUCGAGCAGCUCCUGGUGGCGCUGCCGCUGCAUAUCAGCAUCCGGCUCCGAGGUGGCCGGAAAGU
....(((((((((..(....)..))))...(((((..((((......(....)..)))).(((((.((....)).))))).)))))...))))).((((((((....).))))))).... ( -48.20)
>DroSim_CAF1 38612 120 - 1
GGUGGCUGAAUGGGGCAAAGGAGCUGUAUAGCGGUUCCGAGUGACUGCGAAAGAUCUCGAGCAGCUCCUGGUGGCGCUGCCGCUGCAUAUCAGCAUCCGGCUCCGAGGUGGCCGGAAAGU
....((((((((.(((...(((((((.....)))))))(((......(....)..)))(.(((((.((....)).))))))))).))).))))).((((((((....).))))))).... ( -54.60)
>DroEre_CAF1 18348 120 - 1
GAUGGCUAAAUGGGGCAAAGGAGCUGUACAGCGGCUCCGAGUGACUGCGAAAGAUCUCAAGCAGCUCCUGGUGGCGUUGCCGCUGCAUAUCCGCAUCCGGCUCCGAGGUGGCUGGAAAGU
((((((.....(((((...(((((((.....)))))))(..(((...(....)...)))..).))))).((((((...)))))))).))))....((((((((....).))))))).... ( -48.30)
>consensus
GGUGGCUGAAUGGGGCAAAGGAGCUGUACAGCGGCUCCGAGUGACUGCGAAAGAUCUCGAGCAGCUCCUGGUGGCGCUGCCGCUGCAUAUCAGCAUCCGGCUCCGAGGUGGCCGGAAAGU
....((((((((.(((...(((((((.....)))))))(((......(....)..)))..(((((.((....)).))))).))).))).))))).((((((((....).))))))).... (-47.45 = -48.23 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:14 2006