Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,750,592 – 21,750,712 |
Length | 120 |
Max. P | 0.500000 |
Location | 21,750,592 – 21,750,712 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -50.07 |
Consensus MFE | -43.06 |
Energy contribution | -43.40 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.05 |
Mean z-score | -1.79 |
Structure conservation index | 0.86 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21750592 120 - 23771897 GGUGGAUGAUGGUGUUGCGAUCUGGCCACCGAGGACGCUGGUGACACCAUCUUCGUUGGGAUCUCCCGCCGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUGAGGCGGGAAUCGAGCUU (((((..(((.(.....).)))...)))))(((((.(.((....)).).)))))(((.((...(((((((...(((((((((........))))))))).....))))))).)).))).. ( -51.60) >DroSim_CAF1 38452 120 - 1 GGUGGAUGAUGGUGUUGCGAUCUGGCCACUGAGGACGCUGGUUGCACCAUCUUCAUUGGGAUCUCCCGCCGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUAAGGCGGGACUCGAGCUU ((((((.((((((((.(((.(((........))).))).....))))))))))))))(((...(((((((...(((((((((........))))))))).....))))))))))...... ( -48.90) >DroEre_CAF1 18188 120 - 1 GGUUGAGGAUGGUGUUGCGAUUUGGCCACUAAAGACGCUGGUGGCCCCAUCUUCGUUGGGAUCUCCCGCAGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUGAGGCGGGACUCGAGCUU ....((((((((...........((((((((.......))))))))))))))))(((.(..((((((.(((..(((((((((........))))))))).))).)).))))..).))).. ( -49.70) >consensus GGUGGAUGAUGGUGUUGCGAUCUGGCCACUGAGGACGCUGGUGGCACCAUCUUCGUUGGGAUCUCCCGCCGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUGAGGCGGGACUCGAGCUU ....((.((((((((.(((.(((........))).))).....)))))))).)).(((((...(((((((...(((((((((........))))))))).....)))))))))))).... (-43.06 = -43.40 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:13 2006