| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,749,143 – 21,749,303 |
| Length | 160 |
| Max. P | 0.957315 |
| Location | 21,749,143 – 21,749,263 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.83 |
| Mean single sequence MFE | -36.02 |
| Consensus MFE | -31.62 |
| Energy contribution | -31.12 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.23 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21749143 120 + 23771897 CCAUCAAACACCACUCAAAGUUGAACUUCAAAAUCAACUGGGGGCAAGUUUUCCAGCUCCAAGGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCA (((.....((((......((((((.........)))))).(((((..........)))))..))))...)))....((((((.(((.(((((((....)))))))..)))...)))))). ( -35.00) >DroSec_CAF1 34406 120 + 1 CCAUCAAACACCACUCAAAGUUGAACUUCAAAAUCAACUGGGGGCAAGUGUUCCAGCUCCAACGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCA ......(((((..(((..((((((.........))))))..)))...)))))...(((((((((((((..(((..((((((........)).)))).)))..)))))))....)))))). ( -40.50) >DroSim_CAF1 36290 120 + 1 CCAUCAAACACCACUCAAAGUUGAACUUCAAAAUCAACUGGGGGCAAGUUUUCCAGCUCCAACGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCA ((((..(((....(((..((((((.........))))))..)))...((....((((((((((....)))))...((((((........)).)))))))))....)))))..)))).... ( -37.90) >DroEre_CAF1 16925 120 + 1 CCAUCAAACACCACUCAAAGUUGAACUUCAAAAUCAACUGAGGGCAAGUUUUCCAACUCCAACGUGAGUUGGCAUGGCUCCAAAACAAAGGCAGUCAACUGUAAUACGUUAAAUGGAUCA ((((..(((.((.((((..(((((.........)))))))))))...((((((((...(((((....)))))..)))....)))))....((((....)))).....)))..)))).... ( -30.70) >consensus CCAUCAAACACCACUCAAAGUUGAACUUCAAAAUCAACUGGGGGCAAGUUUUCCAGCUCCAACGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCA ((((..(((.((.((((..(((((.........)))))))))))..((((..(((((((......)))))))...((((((........)).)))))))).......)))..)))).... (-31.62 = -31.12 + -0.50)
| Location | 21,749,183 – 21,749,303 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.72 |
| Mean single sequence MFE | -33.75 |
| Consensus MFE | -26.67 |
| Energy contribution | -27.23 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21749183 120 + 23771897 GGGGCAAGUUUUCCAGCUCCAAGGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCACGAAGAGCAGUUUAUUUUUCUUAUCUUCACAAUACGCGCU (((((..........)))))...(((.((((.....((((((.(((.(((((((....)))))))..)))...))))))..(((((..((.........))..))))).)))).)))... ( -34.10) >DroSec_CAF1 34446 120 + 1 GGGGCAAGUGUUCCAGCUCCAACGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCACGAAGAGCAGUUUCUUUUUCUUAUCUUCACAAUACACGCU ..(((..((((((((.....((((((((..(((..((((((........)).)))).)))..))))))))...))))))))(((((..((.........))..))))).........))) ( -39.40) >DroSim_CAF1 36330 120 + 1 GGGGCAAGUUUUCCAGCUCCAACGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCACGAAGAGCAGUUUCUUUUUCUUAUCUUCACAAUACACGCU (((((..........)))))..((((.((((.....((((((.(((.(((((((....)))))))..)))...))))))..(((((..((.........))..))))).)))).)))).. ( -36.10) >DroEre_CAF1 16965 110 + 1 AGGGCAAGUUUUCCAACUCCAACGUGAGUUGGCAUGGCUCCAAAACAAAGGCAGUCAACUGUAAUACGUUAAAUGGAUCACGAAGAGCUGUUCCUUUAUCUUAUCUUCAC---------- .......((..((((...(((((....)))))..(((((((........)).)))))................))))..))(((((...(.........)...)))))..---------- ( -25.40) >consensus GGGGCAAGUUUUCCAGCUCCAACGUGAGUUGGCACGGCUCCAAAACAAAGGCAGCCAGCUGUUUUACGUUAAAUGGAGCACGAAGAGCAGUUUCUUUUUCUUAUCUUCACAAUACACGCU ............(((((((......)))))))....((((((.(((.(((((((....)))))))..)))...))))))..(((((.................)))))............ (-26.67 = -27.23 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:12 2006