Locus 8303

Sequence ID 3L_DroMel_CAF1
Location 21,747,282 – 21,747,387
Length 105
Max. P 0.998530
window13590

overview

Window 0

Location 21,747,282 – 21,747,387
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.49
Mean single sequence MFE -40.32
Consensus MFE -14.97
Energy contribution -19.99
Covariance contribution 5.02
Combinations/Pair 1.11
Mean z-score -2.97
Structure conservation index 0.37
SVM decision value 3.13
SVM RNA-class probability 0.998530
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21747282 105 + 23771897
GCCUCGUCUCGAUCUCAGCU---------------GAGCUUGUCCGAUGAUGGCCAAUGGUUCCUCCUAGCCUCCUUGCUGGAACACAACCCAAAGAAAGUGCCUUUGGAAAUAGGCACC
((((((((.(((.(((....---------------))).)))...))))).)))...(((((((....(((......)))))))).))...........((((((.(....).)))))). ( -31.40)
>DroSec_CAF1 32230 120 + 1
GCCUCGUCUCGAUCUCAGCUGAGCUGAUCUCAGCUGAGCUAGCCCGAUGAUGGCCAAUGGUUGCUCCUAGCCUCCUUGCUAGAACACAACCCAAAGAAAGUGCCUGUGGAAAUAGGCACC
((((((((..(..((((((((((.....))))))))))....)..))))).)))....(((((...(((((......)))))....)))))........((((((((....)))))))). ( -50.40)
>DroSim_CAF1 34109 120 + 1
GCCUCGUCUCGAUCUCAGCUGAGCUGAUCUCAGCUGAGCUAGCCCGAUGAUGGCCAAUGGUUGCUCCUAGCCUCCUUGCUAGAACACAACCCAAAGAAAGUGCCUGUGGAAAUAGGUACC
((((((((..(..((((((((((.....))))))))))....)..))))).)))....(((((...(((((......)))))....)))))........((((((((....)))))))). ( -48.40)
>DroEre_CAF1 15290 93 + 1
GCCUCGUCUCGAUCACAGCUGAGCU----------GAGCCAG-----------CCAAUGGCUGGUCC------GCCAGCAGGAACACAAUCCAGCGAGAGAGCCUGUGAAAAUAGGCACC
...((.(((((......((((.((.----------(..((((-----------((...))))))..)------)))))).(((......)))..)))))))((((((....))))))... ( -41.50)
>DroYak_CAF1 92082 101 + 1
GCCUCGUCUCGAUCACAGCUGAGCU----------GAGCUAGCCCGA---UGGCCAAUGGUUGGUCC------GCCAGCAAGAACACAAUCCAGCGAAAAAGCCUGUGAAAAUAGGCACC
((((((...)))((((((((..(((----------(.((((......---)))).....(((((...------.)))))............)))).....)).)))))).....)))... ( -29.90)
>consensus
GCCUCGUCUCGAUCUCAGCUGAGCU__________GAGCUAGCCCGAUGAUGGCCAAUGGUUGCUCCUAGCCUCCUUGCUAGAACACAACCCAAAGAAAGUGCCUGUGGAAAUAGGCACC
(((.....(((.....((((................))))....)))....)))....(((((...(((((......)))))....)))))........((((((((....)))))))). (-14.97 = -19.99 +   5.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:04 2006