Locus 8302

Sequence ID 3L_DroMel_CAF1
Location 21,747,021 – 21,747,131
Length 110
Max. P 0.901795
window13589

overview

Window 9

Location 21,747,021 – 21,747,131
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.09
Mean single sequence MFE -33.46
Consensus MFE -32.06
Energy contribution -32.26
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.96
SVM decision value 1.02
SVM RNA-class probability 0.901795
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21747021 110 + 23771897
----------GACGAGGUGCAUGGUCUUCUGACAUUGCCGCGACCGAAACUUUGAUGGUGCAAGCCCAAACCGGUCGCUGCAUACCUCAAUUUCUAUCCACGACCUGUAGCGAAAUAAAA
----------...((((((....(((....)))..(((.(((((((....((((..(((....))))))).))))))).))))))))).(((((....((.....))....))))).... ( -31.20)
>DroSec_CAF1 31969 110 + 1
----------GACGAGGUGCAGGGUCUUCUGACAUUGCCGCGACCGAAACUUUGAUGGUGCAAGCCCAAACCGGUCGCUGCAUACUUCAAUUUCUAUCCACGACCUGUAGCGAUAUAAAA
----------.....(.(((((((((....)))..(((.(((((((....((((..(((....))))))).))))))).))).....................)))))).)......... ( -33.40)
>DroSim_CAF1 33848 110 + 1
----------GACGAGGUGCAGGGUCUUCUGACAUUGCCGCGACCGAAACUUUGAUGGUGCAAGCCCAAACCGGUCGCUGCAUACCUCAAUUUCUAUCCACGACCUGUAGCGAAAUAAAA
----------.....(.(((((((((....)))..(((.(((((((....((((..(((....))))))).))))))).))).....................)))))).)......... ( -33.40)
>DroEre_CAF1 15022 120 + 1
GACGAGGGAAGACGAGGUGCAGGGUCUUCUGACAUUGCCGCGACCGAAACUUUGAUGGUGCAAGCCCAAACCGGUCGCUGCAUACCUCAAUUUCUAUCCACGACCUGUAGCGAAAUAAAA
..((.(((.(((.((((((....(((....)))..(((.(((((((....((((..(((....))))))).))))))).)))))))))....))).))).)).................. ( -36.20)
>DroYak_CAF1 91833 110 + 1
----------GACGAGGUGCAGGGUCUUCAGACAUUGCCGCGACCGAAACUUUGAUGGUGCAAGCCCAAACCGGUCGCUGCAUACCUCAAUUUCUAUCCACGACCUGUAGCGAAAUAAAA
----------.....(.(((((((((....)))..(((.(((((((....((((..(((....))))))).))))))).))).....................)))))).)......... ( -33.10)
>consensus
__________GACGAGGUGCAGGGUCUUCUGACAUUGCCGCGACCGAAACUUUGAUGGUGCAAGCCCAAACCGGUCGCUGCAUACCUCAAUUUCUAUCCACGACCUGUAGCGAAAUAAAA
...............(.(((((((((....)))..(((.(((((((....((((..(((....))))))).))))))).))).....................)))))).)......... (-32.06 = -32.26 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:03 2006