Locus 8301

Sequence ID 3L_DroMel_CAF1
Location 21,746,702 – 21,746,821
Length 119
Max. P 0.524534
window13588

overview

Window 8

Location 21,746,702 – 21,746,821
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.37
Mean single sequence MFE -26.89
Consensus MFE -21.14
Energy contribution -20.70
Covariance contribution -0.44
Combinations/Pair 1.21
Mean z-score -1.44
Structure conservation index 0.79
SVM decision value -0.02
SVM RNA-class probability 0.524534
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21746702 119 + 23771897
CUGGCCAUUUGUGGCCCGUAUUUCCCCAA-AAGUGGCAGCUAAGGCCUCCAUGGAAUACAUUAUUAGCGCACAAAUGUGUUUAAGAAUUUAUAUUGUAUAUCCAUGACAAAAUUGAUCCC
..((((.((.((.((((............-..).))).)).))))))..(((((((((((.(((.((((((....)))))).........))).))))).)))))).............. ( -27.74)
>DroSec_CAF1 31651 118 + 1
CUGGCCAUUUGUGGCCCGUAUUUCCCCA--AAGUGGCAGCUAAGGCCUCCAUGGAAUACAUUAUUAGCGCACAAAUGUGUCUAAGAAUUUAUAUUGUAUAUCCAUGACAAAAUUGAUCCC
..((((.((.((.((((...........--..).))).)).))))))..(((((((((((.((((((.((((....))))))).......))).))))).)))))).............. ( -28.23)
>DroSim_CAF1 33530 118 + 1
CUGGUCAUUUGUGGCCCGUAUUUCCCCA--AAGUGGCAGCUAAGGCCUCCAUGGAAUACAUUAUUAGCGCACAAAUGUGUCUAAGAAUUUAUAUUGUAUAUCCAUGACAAAAUUGAUCCC
..((((((((((((((.........((.--....)).......))))..(((((((((((.((((((.((((....))))))).......))).))))).)))))))))))..))))).. ( -29.10)
>DroEre_CAF1 14703 119 + 1
CUGUCUAUU-GCAGCCCGUAUUUCCCCAAAAAGUGGCAGCUAAGGCCUCUAUGGAAUACUUUAUUUGCACACAAAUGUGUCUAAGAAUUUAUAUUGUAUAUCCAUGACAAAAUUGAUACC
..((((...-((.((((...............).))).))..))))...((((((((((..((((((.((((....)))).)))......)))..)))).)))))).............. ( -20.16)
>DroYak_CAF1 91515 118 + 1
CUGUCUAUU-UAGGCCCGUAUUUGCACAA-AAGUGGCAGAUAAGGUCUCCAUGGAAUACAUUAUUUGCACACAAAUGUGUCUAAGAAUUUAUAUUGUAUAUCCAUGACAAAAUUGAUCCC
..(((.(((-((((((..(((((((((..-..)).))))))).))))).(((((((((((.((((((.((((....)))).)))......))).))))).))))))...)))).)))... ( -29.20)
>consensus
CUGGCCAUUUGUGGCCCGUAUUUCCCCAA_AAGUGGCAGCUAAGGCCUCCAUGGAAUACAUUAUUAGCGCACAAAUGUGUCUAAGAAUUUAUAUUGUAUAUCCAUGACAAAAUUGAUCCC
..((((....((.((((...............).))).))...))))..(((((((((((.(((..(((((....)))))..........))).))))).)))))).............. (-21.14 = -20.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:02 2006