Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,745,725 – 21,745,841 |
Length | 116 |
Max. P | 0.658866 |
Location | 21,745,725 – 21,745,841 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -41.87 |
Consensus MFE | -32.38 |
Energy contribution | -33.02 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.62 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21745725 116 + 23771897 CAGCAUCACGUUGUGGCCACACCACCUGCUGGGCGCAUUUCGCGGAGCAGCUCCCU----GCCACUUGCAUCCCUGGUCCGGAAAAUAUCCAGACUGGGAAAACUCUGGGGAGCACUUAA ..((..(.((.((((.(((((.....)).))).))))...)).)..)).(((((((----((.....)).((((.((((.(((.....))).)))))))).......)))))))...... ( -43.70) >DroSec_CAF1 30097 120 + 1 CAGCAUCACGUAGUGGCAACACCACCUGCUGGGCGCAUUUCGCGGAUCAGCUCCCUGCCUGCCACUCGCAUCCCUGGUCCGGAAAAUGUCCAGACUGGGAAAGCUCAGAGGAGCACUCAA .(((....((.(((((((.........(((((.(((.....)))..)))))........)))))))))..((((.((((.(((.....))).))))))))..)))..(((.....))).. ( -42.53) >DroSim_CAF1 32345 116 + 1 CAGCAUCACGUUGUGGCAACACCACCUGCUGGGCGCAUUUCGCGGAUCAGCUCCCU----GCCACUCGCAUCCCUGGUCCGGAAAAUGUCCAGACUGGGAAAGCUCAGAGGAGCACUCAA ..((........(((....)))..(((.(((((((..((((.((((((((.....(----((.....)))...)))))))))))).))))))).(((((....)))))))).))...... ( -41.40) >DroEre_CAF1 13803 116 + 1 CAGCAUCACGUUGUGGCAACACCACCUGCUGGGCGCAUUUCUCGGAGCAGCUCCCU----ACCACUCGCAGCCCUGGUCCGGAAAAUGUCCAGACUGGGAAACCUCUGAGGAGCACUUAG (((((....((.(((....))).)).)))))((.((..(((((((((..((.....----.......))...((..(((.(((.....))).)))..))....))))))))))).))... ( -39.20) >DroYak_CAF1 90797 116 + 1 CAGCGCCCCAUUGUGGCAGCACCACCUGCUGGGCGCAUUUCGCGGAGCAGCUCCCU----GCCACUCGCAUCCCUGUUCCGGAAAAUGUCCAGACUGGGAAACCUCUGAGGAGCACUUCA ..((((((....((((.....)))).....)))))).((((.((((((((.....(----((.....)))...)))))))))))).....((((..((....)))))).(((....))). ( -42.50) >consensus CAGCAUCACGUUGUGGCAACACCACCUGCUGGGCGCAUUUCGCGGAGCAGCUCCCU____GCCACUCGCAUCCCUGGUCCGGAAAAUGUCCAGACUGGGAAACCUCUGAGGAGCACUUAA (((((....((.(((....))).)).)))))..(((.....))).....(((((......((.....))...(((((((.(((.....))).)))))))..........)))))...... (-32.38 = -33.02 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:01 2006