| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,529,626 – 2,529,751 |
| Length | 125 |
| Max. P | 0.910878 |
| Location | 2,529,626 – 2,529,722 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -20.39 |
| Energy contribution | -20.17 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2529626 96 - 23771897 GGAGCUUCGACCCUCGGAAUGAUCUUAGUUCCGACGGCUACGUUCCACGGUUUAUUUUAUUUCACUUAUUUAUUUUCGUUUUCAGCCAUUCGCUUU (((((...(.((.(((((((.......))))))).)))...)))))..((((...............................))))......... ( -18.78) >DroSec_CAF1 152532 96 - 1 GGAGCUUCGACCCUCGGAACGAUCUUAGUUCCGACGGCUCCGUUCCACGCUUUAUUUUAUUUCACUUAUUUAUUUUCGUUUUCAGCCAUUCGCUUU (((((...((((.(((((((.......))))))).)).)).))))).....................................(((.....))).. ( -21.40) >DroSim_CAF1 150087 95 - 1 GGAGCUUCGACCCUCGGAACGAUCUUAGUUCCGACGGCUCCGUUCCACGGUUUAU-UUAUUUCACUUAUUUAUUUUCGUUUUCAGCCAUUCGCUUU (((((...((((.(((((((.......))))))).)).)).)))))((((..((.-.((.......))..))...))))....(((.....))).. ( -22.30) >consensus GGAGCUUCGACCCUCGGAACGAUCUUAGUUCCGACGGCUCCGUUCCACGGUUUAUUUUAUUUCACUUAUUUAUUUUCGUUUUCAGCCAUUCGCUUU (((((...(.((.(((((((.......))))))).)))...))))).....................................(((.....))).. (-20.39 = -20.17 + -0.22)
| Location | 2,529,658 – 2,529,751 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.27 |
| Mean single sequence MFE | -29.57 |
| Consensus MFE | -28.61 |
| Energy contribution | -28.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.97 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2529658 93 - 23771897 GCUCUCACUCGACAAGAAGGGGGAGUUUGGGAGCUUCGACCCUCGGAAUGAUCUUAGUUCCGACGGCUACGUUCCACGGUUUAUUUUAUUUCA ((((((..((.....))...))))))...(((((...(.((.(((((((.......))))))).)))...))))).................. ( -25.30) >DroSec_CAF1 152564 93 - 1 GCUCUCACCUGCCAAGAAGGGGGAGUUUGGGAGCUUCGACCCUCGGAACGAUCUUAGUUCCGACGGCUCCGUUCCACGCUUUAUUUUAUUUCA ((((((.(((.......)))))))))...(((((...((((.(((((((.......))))))).)).)).))))).................. ( -31.30) >DroSim_CAF1 150119 92 - 1 GCUCUCACCUGCCACGAAGGGGGAGUUUGGGAGCUUCGACCCUCGGAACGAUCUUAGUUCCGACGGCUCCGUUCCACGGUUUAU-UUAUUUCA (((((((.((.((.(....))).))..)))))))...(.((.(((((((.......))))))).))).(((.....))).....-........ ( -32.10) >consensus GCUCUCACCUGCCAAGAAGGGGGAGUUUGGGAGCUUCGACCCUCGGAACGAUCUUAGUUCCGACGGCUCCGUUCCACGGUUUAUUUUAUUUCA ((((((.(((.......)))))))))...(((((...(.((.(((((((.......))))))).)))...))))).................. (-28.61 = -28.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:13 2006