Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 316,812 – 316,932 |
Length | 120 |
Max. P | 0.824321 |
Location | 316,812 – 316,932 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -21.71 |
Consensus MFE | -16.42 |
Energy contribution | -16.80 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.12 |
Mean z-score | -2.08 |
Structure conservation index | 0.76 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 316812 120 - 23771897 UCGCAUUUAUAUUCAUUUCGAUCGGAUCCUCGCAUUAUUGCGAACACUGCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUUUUAGGACUACAUAUUCCUAUCAUGAGAUUAUUCU ...................((((.((((.(((((....)))))...(((((........))))).....))))......((((....(((((........)))))..))))))))..... ( -22.20) >DroSim_CAF1 3141 118 - 1 UCGCAUUUAUAUUCAUCUCGAUCG--UCCUCGGAUUUUUGCGAACACUUCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUCUUAGGACUACAUAUUCCUAUCAUGAGAUUAUUCU ..............((((((((((--((..((((.....((((.....)))).....))))..)))...))))..............(((((........)))))....)))))...... ( -22.60) >DroEre_CAF1 2708 117 - 1 UCGCACCAAUAUUCGUCUUGAUCG--UCCCCGGACUAUUGCGAACACUUCGUUCCUUUCUGUUCAUAAAGAUCACAUAUUCAUAUUUUAGGACCACCUAUUCCUAUUG-GAGAUUAUUCU .....((((((.......((((((--((....)))......(((((.............))))).....))))).............((((....))))....)))))-).......... ( -20.32) >DroYak_CAF1 2942 118 - 1 UCGCACCAAUAUUCAACUUGAUCG--UCCUCGGAUUAUUGCGAACACUUCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUUUUAGGACCACCUAUUCCUAUCAUGAGAUUAUUCU .......((((.((....((((((--((..((((.....((((.....)))).....))))..)))...))))).....((((....(((((........)))))..)))))).)))).. ( -21.70) >consensus UCGCACCAAUAUUCAUCUCGAUCG__UCCUCGGAUUAUUGCGAACACUUCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUUUUAGGACCACAUAUUCCUAUCAUGAGAUUAUUCU ..............(((((((((...((..((((.....((((.....)))).....))))..))....))))..............(((((........)))))....)))))...... (-16.42 = -16.80 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:55 2006