| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,743,723 – 21,743,843 |
| Length | 120 |
| Max. P | 0.982377 |
| Location | 21,743,723 – 21,743,843 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.05 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -28.10 |
| Energy contribution | -28.50 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21743723 120 - 23771897 CCAUCCUUGAUCCUUCUUCCUUCGCGAUCGAGGAUCCACGAUCCAGUCGCUUCAGGCUGCCCCUGGCCCUUUUCUGCUUGAUUGCCGACAGCAGUUGGACAAUUAAAUGUUUGAAUAUCU ..(((((((((((..........).))))))))))...((((...)))).(((((((.(((...)))..........((((((((((((....))))).)))))))..)))))))..... ( -31.70) >DroSec_CAF1 25558 109 - 1 -----------CCUUCAUCCUCCGCGAUCGAGGAUCCACGAUCCAGUCGCUUCAGGCUGCCCCUGGCCCUUUUCUGCUUGAUUGCCGACAGCAGUUGGACAAUUAAAUGUUUGAAUAUCU -----------............(((((...(((((...))))).)))))(((((((.(((...)))..........((((((((((((....))))).)))))))..)))))))..... ( -30.20) >DroSim_CAF1 30444 114 - 1 ------UCGAUCCUUCAUCCUCCGCGAUCGAGGAUCCACGAUCCAGUCGCUUCAGGCUGCCCCUGGCCCUUUUCUGCUUGAUUGCCGACAGCAGUUGGACAAUUAAAUGUUUGAAUAUCU ------..(((((((.(((......))).)))))))..((((...)))).(((((((.(((...)))..........((((((((((((....))))).)))))))..)))))))..... ( -30.90) >DroEre_CAF1 11858 120 - 1 CCAUCCUCGAUCCUUCAUCCUCCGCGAUCGAGGAUCCACGAUCCAGUCGCUCCAGGCUGCCCCUGGCCCUUUUCUGCUUGAUUGCCGACAGCAGUUGGACAAUUAAAUGUUUGUAUAUCU ..(((((((((((..........).))))))))))..((((..(((.....(((((.....))))).......))).((((((((((((....))))).)))))))....))))...... ( -34.20) >DroYak_CAF1 83725 120 - 1 CCAUCCUCGAUCCUUCAUCCUCCACGAUCGAGGAUCCACGAUCCAGUCGCUUCAGGCUGCCCCUGGCCCUUUUCUGCUUGAUUGCCGACAGCAGUUGGACAAUUAAAAGUUUGAAUAUCU ..((((((((((.............))))))))))...((((...)))).(((((((((((...)))..........((((((((((((....))))).))))))).))))))))..... ( -34.92) >consensus CCAUCCUCGAUCCUUCAUCCUCCGCGAUCGAGGAUCCACGAUCCAGUCGCUUCAGGCUGCCCCUGGCCCUUUUCUGCUUGAUUGCCGACAGCAGUUGGACAAUUAAAUGUUUGAAUAUCU .......................(((((...(((((...))))).)))))(((((((.(((...)))..........((((((((((((....))))).)))))))..)))))))..... (-28.10 = -28.50 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:50 2006