Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,740,610 – 21,740,770 |
Length | 160 |
Max. P | 0.965796 |
Location | 21,740,610 – 21,740,730 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -26.50 |
Energy contribution | -27.18 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.74 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21740610 120 + 23771897 UCCGUAUCGCUUCAAGUGGCCACAAUUUGAGGCAGAUUGCGCUCUAAUAAAUAUGGGCAGCCAUCUAAGCUAAUGCCCCAACUCAUCACCGAGUUGAGAGAUGAGCACGCAAGCAGGCGA ..(((...(((((((((.......))))))))).(.((((((((..........)))).(((((((..((....))..((((((......))))))..))))).))..)))).)..))). ( -38.90) >DroSec_CAF1 22513 120 + 1 UUCGUAUCGCUUCAAGUGGCCACAAUUUGAGGCAGAUUGCGCUCUAAUAAAUAUGGGCAGCCAUCAAAGCUAAUGCCCCAACUCAUCACCGAGUUGGGAGAUGAGCACGCGAGCAGGCAA ...((...(((((((((.......))))))))).(.((((((((..........)))).((((((...((....))((((((((......)))))))).)))).))..)))).)..)).. ( -42.60) >DroSim_CAF1 27390 120 + 1 UUCGUAUCGCUCCAAGUGGCCACAAUUUGAGGCAGAUUGCGCUCUAAUAAAUAUGGGCAGCCAUCAAAGCUAAUGCCCCAACUCAUCACCGAGUUGGGAGAUGAGCACGCGAGCAGGCGA .((((...((((......(((.(.....).))).....((((((..........)))).((((((...((....))((((((((......)))))))).)))).))..))))))..)))) ( -43.00) >DroEre_CAF1 8642 115 + 1 UCUAUAUCGCUCCAAGUGGCCACAAUUUGAGGCAGAUAGCGCUCUAAUAAAUAUGUGCAGCCAUCAAAGCUAAUGCCCCAACUCAUCACCG-----GGAGAUGAACACGCGAGCAGGCCA ........((((...(((........(((.((((....((((............))))(((.......)))..)))).))).(((((....-----...))))).)))..))))...... ( -27.50) >DroYak_CAF1 80553 115 + 1 UCUGUAUCGCUUCCAGUGGCAAAAAUUUGAGGCAGAUUGCGCUCUAAUAAAUAUGAGCAACCAUCAAAGCUAAUGCACCAACUCAUCACCG-----GGAGAUGAACACGAGAGCAGGCCA (((((.((((((((.((((......(((((.((.....))((((..........)))).....)))))((....)).........)))).)-----)))).......)))..)))))... ( -26.51) >consensus UCCGUAUCGCUUCAAGUGGCCACAAUUUGAGGCAGAUUGCGCUCUAAUAAAUAUGGGCAGCCAUCAAAGCUAAUGCCCCAACUCAUCACCGAGUUGGGAGAUGAGCACGCGAGCAGGCCA ........((((...(((........(((.(((((((.((((((..........)))).)).)))........)))).)))((((((.((......)).)))))))))..))))...... (-26.50 = -27.18 + 0.68)
Location | 21,740,650 – 21,740,770 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -40.26 |
Consensus MFE | -35.30 |
Energy contribution | -35.62 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.69 |
Structure conservation index | 0.88 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21740650 120 - 23771897 UUAAUUAAGUUUGGGCCUUGGCAACGGGCGCAUGCGUAUCUCGCCUGCUUGCGUGCUCAUCUCUCAACUCGGUGAUGAGUUGGGGCAUUAGCUUAGAUGGCUGCCCAUAUUUAUUAGAGC (((((.((((.(((((....((((((((((...........)))))).))))..((.((((((((((((((....)))))))))((....))..))))))).))))).)))))))))... ( -43.30) >DroSec_CAF1 22553 120 - 1 UUAAUUAAGUUUGGGCCUUGGCAACGGGCGCAUGCGUAUCUUGCCUGCUCGCGUGCUCAUCUCCCAACUCGGUGAUGAGUUGGGGCAUUAGCUUUGAUGGCUGCCCAUAUUUAUUAGAGC (((((.((((.(((((..((....))((((((((((...(......)..))))))).((((.(((((((((....)))))))))((....))...)))))))))))).)))))))))... ( -44.90) >DroSim_CAF1 27430 120 - 1 UUAAUUAAGUUUGGGCCUUGGCAACGGGCGCAUGCGUAUCUCGCCUGCUCGCGUGCUCAUCUCCCAACUCGGUGAUGAGUUGGGGCAUUAGCUUUGAUGGCUGCCCAUAUUUAUUAGAGC (((((.((((.(((((...(((.(((.(.(((.(((.....))).))).).)))(((.((.((((((((((....)))))))))).)).))).......)))))))).)))))))))... ( -45.90) >DroEre_CAF1 8682 115 - 1 UUAAUUAAGUUUGGGCCUUGGCAACGGGCGCAUGCGUAUCUGGCCUGCUCGCGUGUUCAUCUCC-----CGGUGAUGAGUUGGGGCAUUAGCUUUGAUGGCUGCACAUAUUUAUUAGAGC (((((.((((.((.((((..((.(((.(.(((.((.......)).))).).)))..(((((...-----....)))))))..))))..(((((.....)))))..)).)))))))))... ( -34.50) >DroYak_CAF1 80593 115 - 1 UUAAUUAAGUUUGGGCCUUGGCAACGGGCUCAUGCGUAUCUGGCCUGCUCUCGUGUUCAUCUCC-----CGGUGAUGAGUUGGUGCAUUAGCUUUGAUGGUUGCUCAUAUUUAUUAGAGC ........((.(((((((.(....)))))))).)).......(((.((((......(((((...-----.))))).)))).)))......((((((((((..........)))))))))) ( -32.70) >consensus UUAAUUAAGUUUGGGCCUUGGCAACGGGCGCAUGCGUAUCUCGCCUGCUCGCGUGCUCAUCUCCCAACUCGGUGAUGAGUUGGGGCAUUAGCUUUGAUGGCUGCCCAUAUUUAUUAGAGC (((((.((((.(((((((..((.(((.(.(((.(((.....))).))).).)))..(((((.((......)).)))))))..))))..(((((.....))))).))).)))))))))... (-35.30 = -35.62 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:40 2006