Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,527,571 – 2,527,661 |
Length | 90 |
Max. P | 0.689857 |
Location | 2,527,571 – 2,527,661 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 95.19 |
Mean single sequence MFE | -17.88 |
Consensus MFE | -16.16 |
Energy contribution | -16.47 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.62 |
Structure conservation index | 0.90 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2527571 90 - 23771897 UAUUUGGCAAUUAAAAUGGCCGUCCCGCCUUCAUUUAAUGUAACACUUACAUGCUCGACUGCGCGGGUAAUUUACCAACAUUUUUGCUCA .....(((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))).. ( -19.40) >DroSec_CAF1 150490 90 - 1 UAUUUGGUAAUUAAAAUGGCCGUCCCGCCUCCAUUUAAUGUAACACUUACAUGCUCCACUGCGCGGGUAAUUUACCAACAUUUUUGCUGA ...(..((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))..) ( -18.70) >DroSim_CAF1 147781 90 - 1 UAUUUGGCAAUUAAAAUGGCCGUCCCGCCUCCAUUUAAUGUAACACUUACAUGCUUCACUGCGCGGGUAAUUUACCAACAUUUUUGCUCA .....(((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))).. ( -19.40) >DroYak_CAF1 150438 90 - 1 UAUUUGGCAAUUAAAAUCGCCGCCCCGCCUCCAUUUAAUGUAACACUUACAUGCUCUACUGCGCGGAUAAUUUACCAACAUUUUUGCUCA .....(((..........)))...((((.........(((((.....)))))((......))))))........................ ( -14.00) >consensus UAUUUGGCAAUUAAAAUGGCCGUCCCGCCUCCAUUUAAUGUAACACUUACAUGCUCCACUGCGCGGGUAAUUUACCAACAUUUUUGCUCA .....(((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))).. (-16.16 = -16.47 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:11 2006