Locus 829

Sequence ID 3L_DroMel_CAF1
Location 2,527,571 – 2,527,661
Length 90
Max. P 0.689857
window1273

overview

Window 3

Location 2,527,571 – 2,527,661
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 95.19
Mean single sequence MFE -17.88
Consensus MFE -16.16
Energy contribution -16.47
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.90
SVM decision value 0.33
SVM RNA-class probability 0.689857
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2527571 90 - 23771897
UAUUUGGCAAUUAAAAUGGCCGUCCCGCCUUCAUUUAAUGUAACACUUACAUGCUCGACUGCGCGGGUAAUUUACCAACAUUUUUGCUCA
.....(((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))).. ( -19.40)
>DroSec_CAF1 150490 90 - 1
UAUUUGGUAAUUAAAAUGGCCGUCCCGCCUCCAUUUAAUGUAACACUUACAUGCUCCACUGCGCGGGUAAUUUACCAACAUUUUUGCUGA
...(..((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))..) ( -18.70)
>DroSim_CAF1 147781 90 - 1
UAUUUGGCAAUUAAAAUGGCCGUCCCGCCUCCAUUUAAUGUAACACUUACAUGCUUCACUGCGCGGGUAAUUUACCAACAUUUUUGCUCA
.....(((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))).. ( -19.40)
>DroYak_CAF1 150438 90 - 1
UAUUUGGCAAUUAAAAUCGCCGCCCCGCCUCCAUUUAAUGUAACACUUACAUGCUCUACUGCGCGGAUAAUUUACCAACAUUUUUGCUCA
.....(((..........)))...((((.........(((((.....)))))((......))))))........................ ( -14.00)
>consensus
UAUUUGGCAAUUAAAAUGGCCGUCCCGCCUCCAUUUAAUGUAACACUUACAUGCUCCACUGCGCGGGUAAUUUACCAACAUUUUUGCUCA
.....(((((......(((....(((((.........(((((.....)))))((......))))))).......)))......))))).. (-16.16 = -16.47 +   0.31) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:11 2006