Locus 8287

Sequence ID 3L_DroMel_CAF1
Location 21,738,530 – 21,738,649
Length 119
Max. P 0.558461
window13552

overview

Window 2

Location 21,738,530 – 21,738,649
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.16
Mean single sequence MFE -30.29
Consensus MFE -27.23
Energy contribution -27.27
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.24
Structure conservation index 0.90
SVM decision value 0.05
SVM RNA-class probability 0.558461
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21738530 119 - 23771897
CCGGCUGCAUUCCAUCGCUCAUCUGCUUUGCACUCCAUUUGGAGCCGCGCCUUUUUGGGGCACAUAUUUCGCCUCUGAUGUCAUUUCCC-CUCCACAGCCAGCGACUCGCAUAAAUUCGC
..(((((............((((.((...((.((((....))))..))((((.....)))).........))....)))).........-.....))))).(((...))).......... ( -27.57)
>DroSec_CAF1 20416 119 - 1
CCGGCUGCAUUCCAUCGCUCAUCUGCUUUGCACUCCAUUUGGAGCCGCGCCUUUUUGGGGCACAUAUUUGGCCUCUGAUGUCAUUUCCC-CUCCGCAGCCAGCGACUCGCAUAAAUUCGC
..((((((((..((((((......))...((.((((....))))..))........(((((.((....))))))).))))..)).....-....)))))).(((...))).......... ( -33.00)
>DroSim_CAF1 25308 119 - 1
CCGGCUGCAUUCCAUCGCUCAUCUGCUUUGCACUCCAUUUGGAGCCGCGCCUUUUUGGGGCACAUAUUUGGCCUCUGAUGUCAUUUCCC-CUCCGCAGCCAGCGACUCGCAUAAAUUCGC
..((((((((..((((((......))...((.((((....))))..))........(((((.((....))))))).))))..)).....-....)))))).(((...))).......... ( -33.00)
>DroEre_CAF1 6493 120 - 1
CCGGCUGCAUUCCAUCGCUCAUCUGCUUUGCACUCCAUUUGGAGCCGCGCCUUUUUGGGGCACAUAUUUGGCCUCUGAUGUCAUUUCCCUCUCCUCAGCCAGCGACUCGCAUAAAUUCGC
..(((((............((((......((.((((....))))..))........(((((.((....))))))).))))...............))))).(((...))).......... ( -28.73)
>DroYak_CAF1 78073 120 - 1
CCGGCUGCAUUCCAUCGCUCAUCUGCUUCGUACUCCAUUUGGAGCCGCUCCUUUUUGGGGCACAUAUUUGGCCUCUGAUGUCAUUUCCCUCUUCUCAGCCAGCGACUCGCAUAAAUUCGC
..(((((............((((.(((..(((((((....))))..(((((.....)))))...)))..)))....))))...............))))).(((...))).......... ( -29.13)
>consensus
CCGGCUGCAUUCCAUCGCUCAUCUGCUUUGCACUCCAUUUGGAGCCGCGCCUUUUUGGGGCACAUAUUUGGCCUCUGAUGUCAUUUCCC_CUCCGCAGCCAGCGACUCGCAUAAAUUCGC
..(((((............((((......((.((((....))))..))........(((((.((....))))))).))))...............))))).(((...))).......... (-27.23 = -27.27 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:27 2006