Locus 8286

Sequence ID 3L_DroMel_CAF1
Location 21,737,918 – 21,738,035
Length 117
Max. P 0.987315
window13551

overview

Window 1

Location 21,737,918 – 21,738,035
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.19
Mean single sequence MFE -42.55
Consensus MFE -39.01
Energy contribution -39.21
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 2.07
SVM RNA-class probability 0.987315
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21737918 117 - 23771897
-UUUGGGCUCUGGUGCCCAGACACCUCUCCACACAUGUGGAACGACGAAAUUCGGGGCUUGGCCGCAGCAAGCCGCACUUAAGUGGAUUUUGAAGCGUUCUGCGAGGGGCGAAACAAA--
-(((((((......)))))))(.((((((.......(..(((((.(((((((((.((((((.......)))))).)((....))))))))))...)))))..))))))).).......-- ( -45.41)
>DroSec_CAF1 19820 110 - 1
--------UCUGGUGCCCAGACACCUCUCCACACAUGUGGAACGACGAAAUUCGGGGCUUGGCCGCAGCAAGCCGCACUUAAGUGGAUUUUGGAGCGUUCUGCGAGGGGCGAAACAAA--
--------(((((...)))))(.((((((.......(..(((((.(((((((((.((((((.......)))))).)((....))))))))))...)))))..))))))).).......-- ( -40.11)
>DroSim_CAF1 24712 110 - 1
--------UCUGGUGCCCAGACACCUCUCCACAUAUGUGGAACGACGAAAUUCGGGGCUUGGCCGCAGCAAGCCGCACUUAAGUGGAUUUUGGAGCGUUCUGCGAGGGGCGAAACAAA--
--------(((((...)))))(.((((((.......(..(((((.(((((((((.((((((.......)))))).)((....))))))))))...)))))..))))))).).......-- ( -40.11)
>DroEre_CAF1 5881 118 - 1
CUUUGGAGUCUGGUGCCCAGACACCUCUCCACACAUGUGGAACGACGAAAUUCGGGGCUUGGCCAGAGCAAGCCGCACUUAAGUGGAUUUUGGAGCGUUCUGCGAGGGGCGAAACAAA--
.((((..((((((...)))))).((((((.......(..(((((.(((((((((.((((((.......)))))).)((....))))))))))...)))))..))))))))))).....-- ( -44.01)
>DroYak_CAF1 77484 119 - 1
-UUUGGGGUCUGGUGCCCAGACACCUCUCCACACAUGUGGAACGACGAAAUUCGGGGCUUGGCCACAGCAAGCCGCAGUUAAGUGGAUUUUGGAGCGUUCUGCGAGGGGCGAAACAAAAA
-((((((((((((...)))))).))((.((...(.((..(((((.((((((((..((((((.......))))))((......))))))))))...)))))..)).).)).))..)))).. ( -43.10)
>consensus
_UUUGG__UCUGGUGCCCAGACACCUCUCCACACAUGUGGAACGACGAAAUUCGGGGCUUGGCCGCAGCAAGCCGCACUUAAGUGGAUUUUGGAGCGUUCUGCGAGGGGCGAAACAAA__
........(((((...)))))(.((((((.......(..(((((.(((((((((.((((((.......)))))).)((....))))))))))...)))))..))))))).)......... (-39.01 = -39.21 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:26 2006