Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,737,758 – 21,737,878 |
Length | 120 |
Max. P | 0.527256 |
Location | 21,737,758 – 21,737,878 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.83 |
Mean single sequence MFE | -26.74 |
Consensus MFE | -23.42 |
Energy contribution | -23.46 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.09 |
Mean z-score | -1.28 |
Structure conservation index | 0.88 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21737758 120 - 23771897 UUUUCUUUGCUGUUUUGCUCUUUCCGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGAGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC ......(((((((((((((((.......((.((((.(((.(.((((.....)))))))).)))).))(((((....))))))))))))))))............((.....))))))... ( -27.50) >DroSec_CAF1 19660 120 - 1 UUUUCUUUGCUGUUUUGCUCUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC ......(((((((((((((((.......((.((((.(((.(.((((.....)))))))).)))).))(((((....))))))))))))))))............((.....))))))... ( -26.70) >DroSim_CAF1 24552 120 - 1 UUUUCUUUGCUGUUUUGCUCUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC ......(((((((((((((((.......((.((((.(((.(.((((.....)))))))).)))).))(((((....))))))))))))))))............((.....))))))... ( -26.70) >DroEre_CAF1 5723 119 - 1 UU-UCUUUGCUGUUUUGCUUUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUCCGAGCAUAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC ..-...((((.....(((.......)))........((.(((.(((((.((((.((((((....((((((((....))))))))....))...)))))))).)))))))).))))))... ( -28.80) >DroYak_CAF1 77324 120 - 1 UUUUCUUUUCUGUUUUGCUUUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUCGAGCAUAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC ...............(((.......)))((((...(((.(((.(((((.((((.((((((....((((((((....))))))))....))...)))))))).)))))))).))).)))). ( -24.00) >consensus UUUUCUUUGCUGUUUUGCUCUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC ......((((((((((((((........((.((((.(((.(.((((.....)))))))).)))).))(((((....))))).))))))))))............((.....))))))... (-23.42 = -23.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:25 2006