| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,736,494 – 21,736,611 |
| Length | 117 |
| Max. P | 0.619558 |
| Location | 21,736,494 – 21,736,611 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.36 |
| Mean single sequence MFE | -18.61 |
| Consensus MFE | -10.26 |
| Energy contribution | -11.62 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21736494 117 + 23771897 CAAUCAGUUUUUACUAUUUACUAUUUACUAUUUACCACCUUCUAUUUACCAUUUACUGGUAAAGUUGGCUGGCCCUCUGUCCAACUUUGGAACCACCGACCUGGCCAUGUUCGCAUU ............................................(((((((.....)))))))((..(((((((.((..((((....))))......))...))))).))..))... ( -19.90) >DroSec_CAF1 18393 109 + 1 CAACAA----UCACUGUUUACUAUUUACUAUUUACCACCUUCUAUUUACCAUUUACUGGUAGAGUUG----GCCCUCUGGCCAACUUUGGAACCACCGACCUGGCCAUGUUCGCAUU ......----....(((..((.............(((.......(((((((.....)))))))((((----(((....)))))))..)))..(((......)))....))..))).. ( -23.30) >DroSim_CAF1 23297 109 + 1 CAACAA----UCACUGUUUACUAUUUACUAUUUACCACCUUCUAUUUACCAUUUACUGGUAACGUUG----GCCCUCUGGCCAACUUUGGAACCACCGACCUGGCCAUGUUCGCAUU ......----....(((..((.............(((........((((((.....)))))).((((----(((....)))))))..)))..(((......)))....))..))).. ( -22.00) >DroEre_CAF1 4585 96 + 1 CA---A----UCACUGUUUACUAUUUA-------CCACUCACUAUUCACCAUUUGCUGAAAGC---A----GCCCUCUGGCUAACUUUAAAACCACCAACCUGGCCAUGUUCGCAUU ..---.----....(((..((......-------....................((((....)---)----))....((((((..................)))))).))..))).. ( -11.27) >DroYak_CAF1 69541 97 + 1 CA---A----UCACUGUUUACUAUUUA------ACCCCUCACUAUUUACCAUUUACUGAAAGC---A----GCCCUCUGGCCAACUUUAAAGCCACCAAGUUGGCCAUGUUCGCAUU ..---.----.................------............................((---(----((....((((((((((..........)))))))))).))).))... ( -16.60) >consensus CAA__A____UCACUGUUUACUAUUUACUAUUUACCACCUUCUAUUUACCAUUUACUGGUAGCGUUG____GCCCUCUGGCCAACUUUGGAACCACCGACCUGGCCAUGUUCGCAUU .............................................((((((.....)))))).........((...(((((((...((((.....))))..)))))).)...))... (-10.26 = -11.62 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:24 2006