Locus 8283

Sequence ID 3L_DroMel_CAF1
Location 21,736,197 – 21,736,317
Length 120
Max. P 0.998036
window13548

overview

Window 8

Location 21,736,197 – 21,736,317
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -40.33
Consensus MFE -37.09
Energy contribution -37.95
Covariance contribution 0.86
Combinations/Pair 1.03
Mean z-score -2.23
Structure conservation index 0.92
SVM decision value 2.99
SVM RNA-class probability 0.998036
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21736197 120 - 23771897
CCAAUACACGGACACGCAAAGUGUCUACGGCUCCUGGCCAUAUAUGGCGAAUCCUGAGGCUGGGGCCGCUUCGGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACCAAAAGCCA
.........((((((.....))))))..((((..(((((.....(((((..(((.(((((.(....)))))))))..)))))...(((..((.....))..)))))....)))..)))). ( -42.20)
>DroPse_CAF1 45971 113 - 1
CCAACACCGAGACACGCAAAGUGUCUACGGCUUCUGGCCAUAUAUGGAGAAUCCUGA-------GCCGCCUCGGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACAAAAAGCCA
.........((((((.....))))))..(((((...(((.....(((...(((((((-------(....))))).))).)))...(((..((.....))..)))))).......))))). ( -34.20)
>DroSec_CAF1 18096 120 - 1
CCAAUACACGGACACGCAAAGUGUCUACGGCUCCUGGCCAUAUAUGGCGAAUCCUGAGGCUGGGGCCGCUUCGGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACCAAAAGCCA
.........((((((.....))))))..((((..(((((.....(((((..(((.(((((.(....)))))))))..)))))...(((..((.....))..)))))....)))..)))). ( -42.20)
>DroSim_CAF1 23000 120 - 1
CCAAUACACGGACACGCAAAGUGUCUACGGCUCCUGGCCAUAUAUGGCGAAUCCUGAGGCUGGGGCCGCUUCGGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACCAAAAGCCA
.........((((((.....))))))..((((..(((((.....(((((..(((.(((((.(....)))))))))..)))))...(((..((.....))..)))))....)))..)))). ( -42.20)
>DroEre_CAF1 4307 120 - 1
CCAAUACACGGACACGCAAAGUGUCUACGGCUCCUGGCCAUAUAUGGCGAAUCCUGAGGCUGGGGCCGCUUCUGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACCAAAAGCCA
.........((((((.....))))))..((((..(((((.....(((((..((..(((((.(....)))))).))..)))))...(((..((.....))..)))))....)))..)))). ( -39.00)
>DroYak_CAF1 69244 120 - 1
CCAAUACACGGACACGCAAAGUGUCUACGGCUCCUGGCCAUAUAUGGCGAAUCCUGAGGCUGGGGCCGCUUCGGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACCAAAAGCCA
.........((((((.....))))))..((((..(((((.....(((((..(((.(((((.(....)))))))))..)))))...(((..((.....))..)))))....)))..)))). ( -42.20)
>consensus
CCAAUACACGGACACGCAAAGUGUCUACGGCUCCUGGCCAUAUAUGGCGAAUCCUGAGGCUGGGGCCGCUUCGGAGAUGCCAAAAGCAAAGCAAUUUGUCGUGCGGUAAACCAAAAGCCA
.........((((((.....))))))..((((..(((((.....(((((..(((.(((((.......))))))))..)))))...(((..((.....))..)))))....)))..)))). (-37.09 = -37.95 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:23 2006