| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,734,176 – 21,734,273 |
| Length | 97 |
| Max. P | 0.981413 |
| Location | 21,734,176 – 21,734,273 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.63 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.10 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21734176 97 + 23771897 AGAAGCGCAGAAAAUGGGGGUCUCGCAGAUAGAAAACCCAAGACGAGAAAAGAAAUUCCGAAAAUUUUCCCACACUUCUCGAAGGAGGCGCACGCAC ....((((.(((((((((..(((.......)))...)))....((.(((......)))))...))))))........(((....)))))))...... ( -23.50) >DroSec_CAF1 15888 96 + 1 AGAAGCGCGGAAAAUGGGGG-CUCGCAGAUAGAAAACCCAAGACGAGAAAAGAAAUUCCGAAAAUUUUCCCACACUUCUCGAAGGAGGCGCACGCAC ....((((((((((((((..-.((.......))...)))....((.(((......)))))...))))))).......(((....)))))))...... ( -26.20) >DroSim_CAF1 20953 96 + 1 AGAAGCGCGGAAAAUGGGGG-CUCGCACAUAGAAAACCCAAGACGAGAAAAGAAAUUCCGAAAAUUUUCCCACACUUCUCGAAGGAGGCGCACGCAC ....((((((((((((((..-.((.......))...)))....((.(((......)))))...))))))).......(((....)))))))...... ( -26.20) >DroEre_CAF1 2350 97 + 1 AGAAGCGCGGAAAAUGGGUCUUUUGCAGAAAGAAAACCCAAGACGAGAAAAGAAAUUCCGAAAAUUUUCCCACACUUCUCGAAGGAGGCGCACGCAC ....(((((((((((((((.((((......)))).))))....((.(((......)))))...))))))).......(((....)))))))...... ( -28.40) >DroYak_CAF1 67226 97 + 1 AGAAGCGCGGACAGUGGGGGUUUUGCAGAAAGAAAAGCCAAGACGAGAAAAGAAAUUCCGAAAAUUUUCCCACACUUCUCGAAGGAGGCGCACGCAC ....((((.....(((((((((((.........))))))....((.(((......)))))........)))))....(((....)))))))...... ( -28.80) >consensus AGAAGCGCGGAAAAUGGGGGUCUCGCAGAUAGAAAACCCAAGACGAGAAAAGAAAUUCCGAAAAUUUUCCCACACUUCUCGAAGGAGGCGCACGCAC ....((((((((((((((....((.......))...)))....((.(((......)))))...))))))).......(((....)))))))...... (-21.90 = -22.10 + 0.20)
| Location | 21,734,176 – 21,734,273 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 94.63 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -22.86 |
| Energy contribution | -23.62 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21734176 97 - 23771897 GUGCGUGCGCCUCCUUCGAGAAGUGUGGGAAAAUUUUCGGAAUUUCUUUUCUCGUCUUGGGUUUUCUAUCUGCGAGACCCCCAUUUUCUGCGCUUCU (((....)))........(((((((..(((((.....(((((......))).))....(((((((........)))))))...)))))..))))))) ( -26.70) >DroSec_CAF1 15888 96 - 1 GUGCGUGCGCCUCCUUCGAGAAGUGUGGGAAAAUUUUCGGAAUUUCUUUUCUCGUCUUGGGUUUUCUAUCUGCGAG-CCCCCAUUUUCCGCGCUUCU (((....)))........((((((((((((((.....(((((......))).))....((((((.(.....).)))-)))...)))))))))))))) ( -29.30) >DroSim_CAF1 20953 96 - 1 GUGCGUGCGCCUCCUUCGAGAAGUGUGGGAAAAUUUUCGGAAUUUCUUUUCUCGUCUUGGGUUUUCUAUGUGCGAG-CCCCCAUUUUCCGCGCUUCU (((....)))........((((((((((((((.....(((((......))).))....((((((.(.....).)))-)))...)))))))))))))) ( -29.30) >DroEre_CAF1 2350 97 - 1 GUGCGUGCGCCUCCUUCGAGAAGUGUGGGAAAAUUUUCGGAAUUUCUUUUCUCGUCUUGGGUUUUCUUUCUGCAAAAGACCCAUUUUCCGCGCUUCU (((....)))........((((((((((((((.....(((((......))).))...((((((((..........)))))))))))))))))))))) ( -29.90) >DroYak_CAF1 67226 97 - 1 GUGCGUGCGCCUCCUUCGAGAAGUGUGGGAAAAUUUUCGGAAUUUCUUUUCUCGUCUUGGCUUUUCUUUCUGCAAAACCCCCACUGUCCGCGCUUCU (((((..(..(((....))).((((.(((........(((((......))).)).....((..........))....))).)))))..))))).... ( -23.30) >consensus GUGCGUGCGCCUCCUUCGAGAAGUGUGGGAAAAUUUUCGGAAUUUCUUUUCUCGUCUUGGGUUUUCUAUCUGCGAGACCCCCAUUUUCCGCGCUUCU (((....)))........((((((((((((((.....(((((......))).))....(((((((........)))))))...)))))))))))))) (-22.86 = -23.62 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:22 2006