Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,733,527 – 21,733,647 |
Length | 120 |
Max. P | 0.929045 |
Location | 21,733,527 – 21,733,647 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -30.52 |
Consensus MFE | -22.84 |
Energy contribution | -26.12 |
Covariance contribution | 3.28 |
Combinations/Pair | 1.06 |
Mean z-score | -2.42 |
Structure conservation index | 0.75 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.929045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21733527 120 - 23771897 ACAGAAAAUUGUAUUUUAGGAGUGCCAUGAAGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGACUUGCCCACUCCUAAGCGAUUUUCAAUUAGGCAUUUUACAACUAA ...(((((((((...(((((((((.....(((..((((((((...((((((.....))))))..))))))))...)))...))))))))))))))))))..................... ( -31.70) >DroSec_CAF1 15217 120 - 1 AUAGAAAAGUGUAUUUUAGGAGUGCCAUGAGGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGCCUUGCCCACUCCUAAGCGGUUUUCAAUUAGGUAUUUUACAACUAA ...(((((.(((...(((((((((...(((((..((((((((...((((((.....))))))..))))))))..)))))..)))))))))))).)))))..................... ( -36.30) >DroSim_CAF1 20285 120 - 1 AUAGAAAAGUGUAUUUUAGGAGUGCCAUGAGGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGCCUUGCCCACUCCUAAGCGGUUUUCAAUUAGGUAUUUUACAACUAA ...(((((.(((...(((((((((...(((((..((((((((...((((((.....))))))..))))))))..)))))..)))))))))))).)))))..................... ( -36.30) >DroEre_CAF1 1637 120 - 1 AGAGAAAAUUGUAUUUCAGGAGUGCCAUGAGGAACUAUUUGAUGAAUUCCAAAGAAGAGAGUAAUCCAAAGGAGCCUUGCCCACUCCUCAGCCUUUUUCAAUUAGGUCUUUUACAACUAA ........(((((....(((((((...(((((..((.((.(((..(((((......).)))).))).)).))..)))))..)))))))..((((.........))))....))))).... ( -23.30) >DroYak_CAF1 66538 120 - 1 AGAAAAAAGUGUAUUCAAGGAGUGCCGUGAGGAACUAUUUGAUGAAUUCCAAAGGAAAGAGUAAUUCACAGGAGCCUGGCCCACUUCUAAGCCGUUUUCAAUUAGGUCUUUUACACCUAA .(((((..((.......((((((((((((((..(((.((((........))))......)))..)))))((....)))))..))))))..))..)))))..((((((.......)))))) ( -25.00) >consensus AGAGAAAAGUGUAUUUUAGGAGUGCCAUGAGGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGCCUUGCCCACUCCUAAGCGGUUUUCAAUUAGGUAUUUUACAACUAA ...(((((.(((...(((((((((...(((((..((((((((...((((((.....))))))..))))))))..)))))..)))))))))))).)))))..................... (-22.84 = -26.12 + 3.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:20 2006