Locus 828

Sequence ID 3L_DroMel_CAF1
Location 2,525,815 – 2,525,928
Length 113
Max. P 0.653811
window1272

overview

Window 2

Location 2,525,815 – 2,525,928
Length 113
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 85.27
Mean single sequence MFE -28.31
Consensus MFE -18.53
Energy contribution -18.61
Covariance contribution 0.08
Combinations/Pair 1.27
Mean z-score -2.03
Structure conservation index 0.65
SVM decision value 0.25
SVM RNA-class probability 0.653811
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2525815 113 + 23771897
UUGUGUUAAAUCAGUUACUUGAGGCAGGUCGCAAAGUUGUGUCAGAUACCAGAUAAUAGCCUCAAAAGCUUAAUUUGCUAA-UAUACAGUAGUAGUAAGUAAGAGAGUGUGGAA
..........((...((((((((((..(.((((....)))).).(....)........))))).....((((.(((((((.-(((...))).))))))))))).)))))..)). ( -21.80)
>DroSec_CAF1 148762 110 + 1
UUGUGUUAAUGGAGUUACUUGAGGCAGGUCGCAAAGUUGUGGCAGAUACAAGAUAAUAGCCUCAAGAGCUUAAUUUGCUAACUAUAUAUUAGUAGU----AAGAGAGUGUGGAA
...........(((((.((((((((..((((((....))))))..((.....))....)))))))))))))..(((((((.(((.....)))))))----)))........... ( -28.70)
>DroSim_CAF1 146038 110 + 1
UCGUGCUAACAGAGUUACUUGAGGCAGGUCGCAAAGUUGUGGCAGAUACCAGAUAAUAGCCUCAAGAGCAUAAUUUGCUAACUAUAUAUUAGUUGU----AAGAGAGUGUGGAA
(((..((......(((.((((((((..((((((....)))))).(....)........)))))))))))....(((((.(((((.....)))))))----)))..))..))).. ( -32.10)
>DroEre_CAF1 149602 109 + 1
UCGGGUUAAGUGGGUUACUUGAGGCAGGUCGCGAAGUUGUGGCAGAUACCAGAUAAUAGCCUCAAGAGCUUAAUUUGCUAA-UAUAUAGUGGCAGU----AAGAGAGAGUGGGA
((.(.((...((((((.((((((((..((((((....)))))).(....)........))))))))))))))..((((((.-.......)))))).----......)).).)). ( -27.50)
>DroYak_CAF1 148605 102 + 1
UCGGGUUAAGUGAGUUACUUGAGGCAGGUCGCGAAGUUGUGGAAG-------AUAAUAGCCUCAAGAGCUUACUUUCCUGA-UAUAUAGUAGUGGU----AAGAGAGAGUGGGA
(((((..(((((((((.((((((((..(((..............)-------))....))))))))))))))))).)))))-..............----.............. ( -31.44)
>consensus
UCGUGUUAAGUGAGUUACUUGAGGCAGGUCGCAAAGUUGUGGCAGAUACCAGAUAAUAGCCUCAAGAGCUUAAUUUGCUAA_UAUAUAGUAGUAGU____AAGAGAGUGUGGAA
(((..((....(((((.((((((((..((((((....))))))...............)))))))))))))...((((((.........))))))..........))..))).. (-18.53 = -18.61 +   0.08) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:10 2006