Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,525,815 – 2,525,928 |
Length | 113 |
Max. P | 0.653811 |
Location | 2,525,815 – 2,525,928 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.27 |
Mean single sequence MFE | -28.31 |
Consensus MFE | -18.53 |
Energy contribution | -18.61 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.27 |
Mean z-score | -2.03 |
Structure conservation index | 0.65 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2525815 113 + 23771897 UUGUGUUAAAUCAGUUACUUGAGGCAGGUCGCAAAGUUGUGUCAGAUACCAGAUAAUAGCCUCAAAAGCUUAAUUUGCUAA-UAUACAGUAGUAGUAAGUAAGAGAGUGUGGAA ..........((...((((((((((..(.((((....)))).).(....)........))))).....((((.(((((((.-(((...))).))))))))))).)))))..)). ( -21.80) >DroSec_CAF1 148762 110 + 1 UUGUGUUAAUGGAGUUACUUGAGGCAGGUCGCAAAGUUGUGGCAGAUACAAGAUAAUAGCCUCAAGAGCUUAAUUUGCUAACUAUAUAUUAGUAGU----AAGAGAGUGUGGAA ...........(((((.((((((((..((((((....))))))..((.....))....)))))))))))))..(((((((.(((.....)))))))----)))........... ( -28.70) >DroSim_CAF1 146038 110 + 1 UCGUGCUAACAGAGUUACUUGAGGCAGGUCGCAAAGUUGUGGCAGAUACCAGAUAAUAGCCUCAAGAGCAUAAUUUGCUAACUAUAUAUUAGUUGU----AAGAGAGUGUGGAA (((..((......(((.((((((((..((((((....)))))).(....)........)))))))))))....(((((.(((((.....)))))))----)))..))..))).. ( -32.10) >DroEre_CAF1 149602 109 + 1 UCGGGUUAAGUGGGUUACUUGAGGCAGGUCGCGAAGUUGUGGCAGAUACCAGAUAAUAGCCUCAAGAGCUUAAUUUGCUAA-UAUAUAGUGGCAGU----AAGAGAGAGUGGGA ((.(.((...((((((.((((((((..((((((....)))))).(....)........))))))))))))))..((((((.-.......)))))).----......)).).)). ( -27.50) >DroYak_CAF1 148605 102 + 1 UCGGGUUAAGUGAGUUACUUGAGGCAGGUCGCGAAGUUGUGGAAG-------AUAAUAGCCUCAAGAGCUUACUUUCCUGA-UAUAUAGUAGUGGU----AAGAGAGAGUGGGA (((((..(((((((((.((((((((..(((..............)-------))....))))))))))))))))).)))))-..............----.............. ( -31.44) >consensus UCGUGUUAAGUGAGUUACUUGAGGCAGGUCGCAAAGUUGUGGCAGAUACCAGAUAAUAGCCUCAAGAGCUUAAUUUGCUAA_UAUAUAGUAGUAGU____AAGAGAGUGUGGAA (((..((....(((((.((((((((..((((((....))))))...............)))))))))))))...((((((.........))))))..........))..))).. (-18.53 = -18.61 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:10 2006