Locus 8278

Sequence ID 3L_DroMel_CAF1
Location 21,730,190 – 21,730,310
Length 120
Max. P 0.801746
window13540

overview

Window 0

Location 21,730,190 – 21,730,310
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -27.08
Consensus MFE -27.11
Energy contribution -26.08
Covariance contribution -1.03
Combinations/Pair 1.12
Mean z-score -0.75
Structure conservation index 1.00
SVM decision value 0.62
SVM RNA-class probability 0.801746
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21730190 120 + 23771897
AGCCAAUGCCAAUUAAUGACCAAAUUAGUGAGGCACUCAUAGACAAACAGUUGGCCUAUUAUGGCACGGGAUUUUCUACUGAUUUGGUUCGAAUUGUGAUUUAUUUCUGCAGACUGUCUU
......((((((((...((((((((((((((((..(((...(((.....))).(((......)))..)))..)))).))))))))))))..))))).((......)).)))......... ( -28.60)
>DroPse_CAF1 39858 120 + 1
AGCCGAUGCCAAUUAAUGACCAAAUUAGUGAAGCACUCAUAGACAAACACUUGACCGAUUAUGGUACGGGAUUUUCUACUGAUUUGGUUCGAAUUGUGAUUUAUUUCCACAGACUGUCUU
....(((..(((((...((((((((((((((((..(((.....(((....)))(((......)))..)))..)))).))))))))))))..)))))..)))................... ( -24.40)
>DroSec_CAF1 11940 120 + 1
AGCCAAUGCCAAUUAAUGACCAAAUUAGUGAGGCACUCAUAGACAAACACUUGGCCUAUUAUGGCACGGGAUUUUCUACUGAUUUGGUUCGAAUUGUGAUUUAUUUCUGCAGACUGUCUU
......((((((((...((((((((((((((((..(((.....(((....)))(((......)))..)))..)))).))))))))))))..))))).((......)).)))......... ( -28.40)
>DroSim_CAF1 16990 120 + 1
AGCCAAUGCCAAUUAAUGACCAAAUUAGUGAGGCACUCAUAGACAAACACUUGGCCUAUUAUGGCACGGGAUUUUCUACUGAUUUGGUUCGAAUUGUGAUUUAUUUCUGCAGACUGUCUU
......((((((((...((((((((((((((((..(((.....(((....)))(((......)))..)))..)))).))))))))))))..))))).((......)).)))......... ( -28.40)
>DroPer_CAF1 38549 120 + 1
AGCCGAUGCCAAUUAAUGACCAAAUUAGUGAAGCACUCAUAGACAAACACUUGACCGAUUAUGGUACGGGAUUUUCUACUGAUUUGGUUCGAAUUGUGAUUUAUUUCCACAGACUGUCUU
....(((..(((((...((((((((((((((((..(((.....(((....)))(((......)))..)))..)))).))))))))))))..)))))..)))................... ( -24.40)
>DroYak_CAF1 62966 120 + 1
AGCCAAUGCCAAUUAAUGACCAAAUUAGUGAGGCACUCAUAGACAAACACUUGGCCUAUUAUGGCACGGGAUUUUCUACUAAUUUGGUUCGAAUUGUGAUUUAUUUCUGCAGACUGUCUU
......((((((((...((((((((((((((((..(((.....(((....)))(((......)))..)))..)))).))))))))))))..))))).((......)).)))......... ( -28.30)
>consensus
AGCCAAUGCCAAUUAAUGACCAAAUUAGUGAGGCACUCAUAGACAAACACUUGGCCUAUUAUGGCACGGGAUUUUCUACUGAUUUGGUUCGAAUUGUGAUUUAUUUCUGCAGACUGUCUU
....(((..(((((...((((((((((((((((..(((.....(((....)))(((......)))..)))..)))).))))))))))))..)))))..)))................... (-27.11 = -26.08 +  -1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:16 2006