Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,730,033 – 21,730,150 |
Length | 117 |
Max. P | 0.538111 |
Location | 21,730,033 – 21,730,150 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.04 |
Mean single sequence MFE | -15.56 |
Consensus MFE | -10.18 |
Energy contribution | -11.05 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21730033 117 + 23771897 UUUAAUAUUUGGAUAAAAAAACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUAGUGGUCAUCUCUAUCGCCCCAAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA ........((((..............))))................(((((..(.........)..)))))..............((((...((((((((....)))))))).)))) ( -15.44) >DroSec_CAF1 11783 117 + 1 UUUUAUAUAUGCACAAAAAUACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUGGUGGUCAUCUCUAUCGCCCCUAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA ...(((((((((..................................(((((..(((.....)))..))))).......................((((....))))))))))))).. ( -20.90) >DroSim_CAF1 16833 117 + 1 UUUAAUAUAUGCACAAAAUUACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUAGUGGUCAUCUCUAUCGCCCCUAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA ....((((((((..................................(((((..(.........)..))))).......................((((....))))))))))))... ( -14.60) >DroYak_CAF1 62810 116 + 1 UCUUAGU-UUUGAUAAAUAUAUUGCCCUAAUUCUAGUUUCCCAGCAACCACUACCAAAUUAUAUUGAUCAUCUCUAUCGCACCAAUACAGCAAUAUUCAUACGUAUGUAUAUAUGCA ...(((.-..((((.((((((((((...(((....))).....))))............)))))).))))...))).............(((((((.(((....))).)))).))). ( -11.30) >consensus UUUAAUAUAUGCACAAAAAUACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUAGUGGUCAUCUCUAUCGCCCCAAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA ..............................................((((((((.........))))))))..................(((((((((((....)))))))).))). (-10.18 = -11.05 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:14 2006