Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,728,336 – 21,728,436 |
Length | 100 |
Max. P | 0.942728 |
Location | 21,728,336 – 21,728,436 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.12 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -17.41 |
Energy contribution | -19.72 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.17 |
Mean z-score | -2.11 |
Structure conservation index | 0.51 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21728336 100 - 23771897 GGAUCUCCGGAGCUC--------UGGAGCUCUGGAG-------CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU-----CAGUGCGUGGCUGGGCGAUCAAAAUUAAAG .(((((((((((((.--------...)))))))))(-------((...(.(((.((((((........)))))).))).)..(((-----((.....))))).))))))).......... ( -33.30) >DroPse_CAF1 37354 94 - 1 AGAGCUCCAG-------------UAGAGUUCCAAAG-------CUUUGAGCUCAAGUUGUCAACCCAAAUAGAUGAAGACGAAACGACUAGACUGCGUGGCUGAGCGAUCAAAA------ .((((((...-------------..)))))).....-------.((((((((((.(((.(((.(.......).))).)))(..(((.(......))))..))))))..))))).------ ( -20.40) >DroSec_CAF1 9994 108 - 1 GGAUCUCCGGAGCUCUGGAGCUCUGGAGCUCUGGAG-------CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU-----CAGUGCGUGGCUGGGCGAUCAAAAUCAAAA .((((((((((((((..(....)..))))))))))(-------((...(.(((.((((((........)))))).))).)..(((-----((.....))))).))))))).......... ( -40.80) >DroSim_CAF1 15034 108 - 1 GGAUCUCCGGAGCUCCGGAGCACUGGAGCUCUGGAG-------CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU-----CAGUGCGUGGCUGGGCGAUCAAAAUCAAAA .(((((((((((((((((....)))))))))))))(-------((...(.(((.((((((........)))))).))).)..(((-----((.....))))).))))))).......... ( -42.40) >DroPer_CAF1 36008 94 - 1 AGAGCUCCAG-------------UAGAGUUCCAAAG-------CUUUGAGCUCAAGUUGUCAACCCAAAUAGAUGAAGACGAAACGACUAGACUGCGUGGCUGAGCGAUCAAAA------ .((((((...-------------..)))))).....-------.((((((((((.(((.(((.(.......).))).)))(..(((.(......))))..))))))..))))).------ ( -20.40) >DroYak_CAF1 60806 108 - 1 AGAUCUCCGGAGCUCC-GAGCUCUGGAGCUCUGGAGUCUGGACCUGUAAGCUCAACUUGUCAACUCAAAUAGGUUGAGGUAAAUU-----CAGUGCGUGGCUGGGCGAUCAAAA------ .(((((((((((((((-(.....))))))))))))(((..(.(((((((.((((((((((........)))))))))).).....-----...)))).)))..)))))))....------ ( -47.20) >consensus AGAUCUCCGGAGCUC________UGGAGCUCUGGAG_______CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU_____CAGUGCGUGGCUGGGCGAUCAAAA______ .((((((((((((((..........))))))))))..............(((((..(((((.(((......)))...)))))............((...))))))))))).......... (-17.41 = -19.72 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:13 2006