| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,727,801 – 21,727,939 |
| Length | 138 |
| Max. P | 0.659231 |
| Location | 21,727,801 – 21,727,902 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 98.03 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -21.36 |
| Energy contribution | -21.43 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21727801 101 - 23771897 ACGCUGCAAAUUUGCAGCAGCGUAUAGGUAUUUUCAUAUAUAUUUCUUGCAGCAC-CAAAACCAAGUCAAAACCAAGUCACGCGUUGCAGCUGAAUGCAGCA ..((((((.(.(((((((.((((..((((((........))))))((((......-......)))).............))))))))))).)...)))))). ( -23.90) >DroSec_CAF1 9454 101 - 1 ACGCUGCAAAUUUGCAGCAGCGUAUAGGUAUUUUCAUAUAUAUUUCUUGCAGCAC-CAAAACCAAGUCAAAACCAAGUCACGCGUUGCAGCUGAAUGCAACA ..((((((....)))))).((((..((((((........))))))((((......-......)))).............))))((((((......)))))). ( -23.70) >DroSim_CAF1 14494 101 - 1 ACGCUGCAAAUUUGCAGCAGCGUAUAGGUAUUUUCAUAUAUAUUUCUUGCAGCAC-CAAAACCAAGUCAAAACCAAGUCACGCGUUGCAGCUGAAUGCAACA ..((((((....)))))).((((..((((((........))))))((((......-......)))).............))))((((((......)))))). ( -23.70) >DroYak_CAF1 60288 102 - 1 ACGCUGCAAAUUUGCUGCAGCUUAUAGGUAUUUUCAUAUAUAUUUCUUGCAGCACCCAAAACCAAGUCAAAACCAAGUCACGCGUUGCAGCUGAAUGCAACA ..(((((((...((((((((...(((.((((....)))).)))...))))))))...........(.(........).).....)))))))........... ( -22.20) >consensus ACGCUGCAAAUUUGCAGCAGCGUAUAGGUAUUUUCAUAUAUAUUUCUUGCAGCAC_CAAAACCAAGUCAAAACCAAGUCACGCGUUGCAGCUGAAUGCAACA ..(((((((....((....))(((((((.....)).))))).....)))))))..............................((((((......)))))). (-21.36 = -21.43 + 0.06)
| Location | 21,727,841 – 21,727,939 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 94.50 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -22.55 |
| Energy contribution | -24.30 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21727841 98 + 23771897 GUUUUG-GUGCUGCAAGAAAUAUAUAUGAAAAUACCUAUACGCUGCUGCAAAUUUGCAGCGUUUUUGUGGUUCCGUUCGCACGUUCAGG---GCAGCCAACA ......-(.(((((..........(((....)))(((..(((..((((((....)))))).....(((((......))))))))..)))---)))))).... ( -28.40) >DroSec_CAF1 9494 98 + 1 GUUUUG-GUGCUGCAAGAAAUAUAUAUGAAAAUACCUAUACGCUGCUGCAAAUUUGCAGCGUUUUUGUGGUUCAGUUCGCACGUUCAGG---GCAGCCAACA ......-(.(((((..........(((....)))(((..(((..((((((....)))))).....(((((......))))))))..)))---)))))).... ( -28.40) >DroSim_CAF1 14534 98 + 1 GUUUUG-GUGCUGCAAGAAAUAUAUAUGAAAAUACCUAUACGCUGCUGCAAAUUUGCAGCGUUUUUGUGGUUCAGUUCGCACGUUCAGG---GCAGCCAACA ......-(.(((((..........(((....)))(((..(((..((((((....)))))).....(((((......))))))))..)))---)))))).... ( -28.40) >DroYak_CAF1 60328 101 + 1 GUUUUGGGUGCUGCAAGAAAUAUAUAUGAAAAUACCUAUAAGCUGCAGCAAAUUUGCAGCGUU-UUGUGGUUUAGUUCGCAGGUUCAGGCCAGCAGCCCACA ....((((((((((..(((.....(((....)))(((....(((((((.....)))))))...-..((((......))))))))))..).))))).)))).. ( -30.90) >consensus GUUUUG_GUGCUGCAAGAAAUAUAUAUGAAAAUACCUAUACGCUGCUGCAAAUUUGCAGCGUUUUUGUGGUUCAGUUCGCACGUUCAGG___GCAGCCAACA .......(.(((((..........(((....)))(((..(((((((.........)))))))...(((((......))))).....)))...)))))).... (-22.55 = -24.30 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:12 2006