Locus 8273

Sequence ID 3L_DroMel_CAF1
Location 21,725,629 – 21,725,749
Length 120
Max. P 0.995342
window13530

overview

Window 0

Location 21,725,629 – 21,725,749
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.28
Mean single sequence MFE -29.98
Consensus MFE -29.04
Energy contribution -28.57
Covariance contribution -0.47
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.97
SVM decision value 2.57
SVM RNA-class probability 0.995342
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21725629 120 + 23771897
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGGAGCCGCCACUCGAUACAAAUCUAUUUUCGUUCCCCGACUCCGUUCAGUUUCGGUCGGCAUUA
..........(((....(((((......(((((...((((...((((.((((.....))))))))...)))).)))))......)))))..((((..(......)..))))..))).... ( -28.80)
>DroPse_CAF1 34633 120 + 1
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUCCCCGGCUCGGUUCGGUUUCGGUCGGCAUUA
..........(((....(((((......(((((...((((...((((.(((((...)))))))))...)))).)))))......)))))....(((.(((.......))))))))).... ( -29.80)
>DroSec_CAF1 7536 120 + 1
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGGAGCCGCCACUCGAUACAAAUCUAUUUUUGUUCCCCGACUCCGUUCAGUUUCGGUUGGCAUUA
..........((((......(((((((.(((((...((((...((((.((((.....))))))))...)))).)))))....)))))))..((((..(......)..)))).)))).... ( -31.30)
>DroSim_CAF1 12577 120 + 1
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGGAGCCGCCACUCGAUACAAAUCUAUUUUCGUUCCCCGACUCCGUUCAGUUUCGGUUGGCAUUA
..........((((...(((((......(((((...((((...((((.((((.....))))))))...)))).)))))......)))))..((((..(......)..)))).)))).... ( -29.10)
>DroPer_CAF1 33238 120 + 1
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUCCCCGGCUCGGUUCGGUUUCGGUCGGCAUUA
..........(((....(((((......(((((...((((...((((.(((((...)))))))))...)))).)))))......)))))....(((.(((.......))))))))).... ( -29.80)
>DroYak_CAF1 58023 120 + 1
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUCCCCGACUCUGUUCAGUUUCGGUCGGCAUUA
..........(((....(((((......(((((...((((...((((.(((((...)))))))))...)))).)))))......)))))..((((..((....))..))))..))).... ( -31.10)
>consensus
CAUAAAUCUCGCCACACAAUGACAAAAUAUUUGCAAAUCGCAAGGCGCGCUUCAGAGAAGCCGCCACUCGAUACAAAUCUAUUUUCGUUCCCCGACUCCGUUCAGUUUCGGUCGGCAUUA
..........(((.......(((((((((((((...((((...((((.(((((...)))))))))...)))).))))..)))))).)))..((((..(......)..))))..))).... (-29.04 = -28.57 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:06 2006