Locus 8271

Sequence ID 3L_DroMel_CAF1
Location 21,724,140 – 21,724,230
Length 90
Max. P 0.694883
window13527

overview

Window 7

Location 21,724,140 – 21,724,230
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.76
Mean single sequence MFE -30.77
Consensus MFE -14.31
Energy contribution -14.08
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -2.44
Structure conservation index 0.46
SVM decision value 0.34
SVM RNA-class probability 0.694883
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21724140 90 - 23771897
ACACGAGCUUGGGG---------------AUGGAUACUUUUUGGACCUCUGUCUAGGCCAUCCCAGAGGCU------------CGGGCAAUUCUUAUUUGAUUCCAUUUAU--U-UUUGA
...(((((((.(((---------------((((......(((((((....))))))))))))))..)))))------------))((.((((.......))))))......--.-..... ( -28.80)
>DroPse_CAF1 32907 120 - 1
ACACGAGCUUGGGGAUAGGAUGCUAUGGGAUGGAUACAUUUUGGACCUCUGUCUAGGCCAUCCCAGAGGCUCAGCCUCAGACUCAGGCAAUUUUUAUUUGAUUUUAUUUAGUUUUUUUUG
......(((((((..((((..(((.((((((((......(((((((....)))))))))))))))..)))....))).)..)))))))................................ ( -36.20)
>DroSec_CAF1 6050 90 - 1
ACACGAGCUUGGGG---------------AUGGAUACUUUUUGGACCUCUGUCUAGGCCAUCCCAGAGGCU------------CGGGCAAUUCUUAUUUGAUUCCAUUUAU--U-UUUGA
...(((((((.(((---------------((((......(((((((....))))))))))))))..)))))------------))((.((((.......))))))......--.-..... ( -28.80)
>DroSim_CAF1 11069 90 - 1
ACACGAGCUUGGGG---------------AUGGAUACUUUUUGGACCUCUGUCUAGGCCAUCCCAGAGGCU------------CGGGCAAUUCUUAUUUGAUUCCAUUUAU--U-UUUGA
...(((((((.(((---------------((((......(((((((....))))))))))))))..)))))------------))((.((((.......))))))......--.-..... ( -28.80)
>DroPer_CAF1 31621 119 - 1
ACACGAGCUUGGGGAUAGGAUGCUAUGGGAUGGAUACAUUUUGGACCUCUGUCUAGGCCAUCCCAGAGGCUCAGCCUCAGACUCAGGCAAUUUUUAUUUGAUUUUAUUUAGUUU-UUUUG
......(((((((..((((..(((.((((((((......(((((((....)))))))))))))))..)))....))).)..)))))))..........................-..... ( -36.20)
>DroYak_CAF1 56633 90 - 1
ACACGAGCUUGGGG---------------AUGGAUACUUUUUGGACCUCUGUCUAGGCCAUUCCGUAGGCU------------CGGGCCAUUUUUAUUUGAUUCCAUUUAU--U-UUCGA
...(((((((((((---------------((((......(((((((....)))))))))))))).))))))------------))..........................--.-..... ( -25.80)
>consensus
ACACGAGCUUGGGG_______________AUGGAUACUUUUUGGACCUCUGUCUAGGCCAUCCCAGAGGCU____________CGGGCAAUUCUUAUUUGAUUCCAUUUAU__U_UUUGA
......(((((..............................(((((....)))))((((........))))............)))))................................ (-14.31 = -14.08 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:03 2006