Locus 827

Sequence ID 3L_DroMel_CAF1
Location 2,525,320 – 2,525,414
Length 94
Max. P 0.952091
window1271

overview

Window 1

Location 2,525,320 – 2,525,414
Length 94
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.12
Mean single sequence MFE -24.86
Consensus MFE -20.84
Energy contribution -21.12
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 1.42
SVM RNA-class probability 0.952091
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2525320 94 + 23771897
-----GUUUCUCGUCAGAAAAAUUGAAGGUGAAAUGUUGCCAACGGAAGCAAUUAGUUUCAUUUGGAGCUGCAGCAACUCGAAAGGGGAGAAAACACAA
-----.((((((......................((((((...(....).....((((((....)))))))))))).(((....)))))))))...... ( -23.90)
>DroSec_CAF1 148272 93 + 1
-----GUUUCUCGCCGGG-AAAUUGAAGGUGAAAUGUUGCCAACGGAAGCAAUUAGUUUCAUUUGGAGCUGCAGCAACUGGAAAGGGGAGAAAACACAA
-----.((((((.((...-........((..(....)..))..(((..((...(((((((....)))))))..))..)))....)).))))))...... ( -25.70)
>DroSim_CAF1 145546 93 + 1
-----GUUUCUCGCCGGA-GAACUGACGGUGAAAUGUUGCCAACGGAAGCAAUUAUUUUCAUUUGGAGCUGCAGCAACUGGAAAGGGGAGAAAACACAA
-----.((((((((.(.(-(..(..(..((((((.(((((........)))))...)))))))..)..)).).))..((....))..))))))...... ( -23.40)
>DroEre_CAF1 149129 90 + 1
-----GUUUCUCGCCGGA-AAAUUGAAGGUGAAAUGUUGCAAACGGAAGCAAUUAGUUUCAUUUGGAGCUGCAGCAACUCGAAAGGGGAGAAAACA---
-----.(((((((((...-........)))....((((((...(....).....((((((....)))))))))))).(((....)))))))))...--- ( -26.30)
>DroYak_CAF1 148102 95 + 1
UCGCCGUUUCUCGCUGGA-AAAUUGAAGGUGAAUUGUUGCAAACGGAAGCAAUUAGUUUCAUUUGGAGCUGCAGCAACGCGAAAGGGGAGAAAACA---
......((((((((((.(-...((..(((((((..(((((........)))))....))))))).))..).))))..(.(....).)))))))...--- ( -25.00)
>consensus
_____GUUUCUCGCCGGA_AAAUUGAAGGUGAAAUGUUGCCAACGGAAGCAAUUAGUUUCAUUUGGAGCUGCAGCAACUCGAAAGGGGAGAAAACACAA
......((((((.((...........((((((((((((((........)))))..)))))))))...((....)).........)).))))))...... (-20.84 = -21.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:09 2006