Locus 8269

Sequence ID 3L_DroMel_CAF1
Location 21,722,301 – 21,722,401
Length 100
Max. P 0.661229
window13521

overview

Window 1

Location 21,722,301 – 21,722,401
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -20.73
Consensus MFE -17.66
Energy contribution -17.30
Covariance contribution -0.36
Combinations/Pair 1.17
Mean z-score -1.35
Structure conservation index 0.85
SVM decision value 0.27
SVM RNA-class probability 0.661229
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21722301 100 - 23771897
----------------AACGCCUAGUAAAACAUGUCAUAACAAAUUUAUUGCUAAAUAAUGAACUUUAUAUUGU-UGGCAAUGAGUUCCGAGUUUCAAAAUGUUUGCAAAUCA---AAUG
----------------........(((((.(((.....(((.(((((((((((((.(((((.......))))))-))))))))))))....))).....))))))))......---.... ( -18.00)
>DroPse_CAF1 30967 120 - 1
AACUGACUAACUGCCUAACGCCUGGCAAAACAUGUCAUAACAAAUUUAUUGCGAAAUAAUGAACUUUAUAUUGUCUUGCAAUGGAUUACGCGUAGCAAAAUGUACGUACUUCGCUUAAGG
...((((....((((........))))......)))).....((((((((((((.((((((.......)))))).))))))))))))..(((((........)))))............. ( -25.20)
>DroSec_CAF1 4256 100 - 1
----------------AACGCCUAGUAAAACAUGUCAUAACAAAUUUAUUGCUAAAUAAUGAACUUUAUAUUGU-UGGCAAUGAGUUCCGAGUUUCAGAAUGUUUGCAAAUCA---AAUG
----------------........(((((.(((.....(((.(((((((((((((.(((((.......))))))-))))))))))))....))).....))))))))......---.... ( -18.00)
>DroSim_CAF1 8945 100 - 1
----------------AACGCCUAGUAAAACAUGUCAUAACAAAUUUAUUGCUAAAUAAUGAACUUUAUAUUGU-UGGCAAUGAGUUCCGAGUUUCAGAAUGUUUGCAAAUCA---AAUC
----------------........(((((.(((.....(((.(((((((((((((.(((((.......))))))-))))))))))))....))).....))))))))......---.... ( -18.00)
>DroPer_CAF1 29687 120 - 1
AACUGACUAACUGCCUAACGCCUGGCAAAACAUGUCAUAACAAAUUUAUUGCGAAAUAAUGAACUUUAUAUUGUCUUGCAAUGGAUUACGCGUAGCAAAAUGUACGUACUUCGCUUAAGG
...((((....((((........))))......)))).....((((((((((((.((((((.......)))))).))))))))))))..(((((........)))))............. ( -25.20)
>DroYak_CAF1 54810 100 - 1
----------------AACGCCUAGCAAAACAUGUCAUAACAAAUUUAUUGCUAAAUAAUGAACUUUAUAUUGU-UGGCAAUGAGUUCCCAGUUUCAAAAUGUUUGCAAAUCA---AAUG
----------------........(((((.(((.....(((.(((((((((((((.(((((.......))))))-))))))))))))....))).....))))))))......---.... ( -20.00)
>consensus
________________AACGCCUAGCAAAACAUGUCAUAACAAAUUUAUUGCUAAAUAAUGAACUUUAUAUUGU_UGGCAAUGAGUUCCGAGUUUCAAAAUGUUUGCAAAUCA___AAUG
........................(((((.(((.....(((.((((((((((((.((((((.......)))))).))))))))))))....))).....))))))))............. (-17.66 = -17.30 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:58 2006