Locus 8265

Sequence ID 3L_DroMel_CAF1
Location 21,716,609 – 21,716,702
Length 93
Max. P 0.948480
window13513

overview

Window 3

Location 21,716,609 – 21,716,702
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 93.91
Mean single sequence MFE -37.53
Consensus MFE -32.40
Energy contribution -32.73
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.33
Structure conservation index 0.86
SVM decision value 1.38
SVM RNA-class probability 0.948480
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21716609 93 + 23771897
CCGAGCGGCGGCAACGCCAACAGCCACUUGCAAGUCGAAGCCAGCAAUGUGCAACUGCAAAUGCAGCAAACGGCAUUUGUUGCUGGUCGGCUU
......((((....))))....((.....))((((((..(((((((((((((..((((....))))......))))..))))))))))))))) ( -38.30)
>DroSim_CAF1 2775 93 + 1
CCGAGCGGCGGCAACGCCAGCAGCAACUUGCAACUUGAAGCCAGCAAUGUGCAACUGCAAAUGCAGCAAACGGCAUUUGUUGCUGGUCGGCUU
((((.(((((....))))((((((((..(((...(((..((((....)).))..((((....)))))))...))).))))))))).))))... ( -40.60)
>DroYak_CAF1 49265 93 + 1
CCGAUCGGCGGCAACGCCAACAGCAACUUGCAACUAGAAGCCAGCAAUGUGCAACUGCAAAUACAGCAAGCGGCAUUUGAUGCUGGUCGGCUU
(((((.((((....))))..(((((.(.(((..((....((((....)).))...(((.......)))))..)))...).))))))))))... ( -33.70)
>consensus
CCGAGCGGCGGCAACGCCAACAGCAACUUGCAACUAGAAGCCAGCAAUGUGCAACUGCAAAUGCAGCAAACGGCAUUUGUUGCUGGUCGGCUU
((((..((((....))))....((.....)).........((((((((((((...(((.......)))....))))..))))))))))))... (-32.40 = -32.73 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:50 2006