Locus 8264

Sequence ID 3L_DroMel_CAF1
Location 21,714,956 – 21,715,071
Length 115
Max. P 0.934361
window13512

overview

Window 2

Location 21,714,956 – 21,715,071
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.91
Mean single sequence MFE -29.57
Consensus MFE -12.34
Energy contribution -12.62
Covariance contribution 0.28
Combinations/Pair 1.29
Mean z-score -2.17
Structure conservation index 0.42
SVM decision value 1.24
SVM RNA-class probability 0.934361
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21714956 115 + 23771897
ACAUUUCUCAUAAAUGGCCUAGCUUAUUGACAUUUAAUGUCAGCUUAAAGCUGAAAUAAUACACGUAUAAGCAAGUAGUAGUCUCUCCAACUGGUUGAGAUCUG-----CAUGGAAACUU
...((((.(((..........((((((............(((((.....)))))............)))))).....((((((((.((....))..)))).)))-----))))))))... ( -27.95)
>DroPse_CAF1 22535 114 + 1
ACAAUUCUCAUAAAUGGCCAGCCAUAUUGACAGUCAAUGGCAGCU--AAAGCGAAAGAAUACCAGU----GCUCGUAAUCGUCGUUUCUGCCGGCUCUGAUCUGAAGACCAUGGGAAACA
....(((((((..((((....)))).....((((((.((((((..--.((((((..((.(((....----....))).)).))))))))))))....))).)))......)))))))... ( -29.90)
>DroSim_CAF1 1150 115 + 1
ACAUUUCUCAUAAAUGGCCUAGCUUAUUGACAUUUAAUGUCAGCUUUAAGCUGAAAUAAUACACGUAUAAGCAAGUAGUAGUCUCUCCAACUGGUUGAGAUCUG-----CAUGGGAAACU
...((((((((..........((((((............(((((.....)))))............)))))).....((((((((.((....))..)))).)))-----))))))))).. ( -32.05)
>DroPer_CAF1 21586 114 + 1
ACAAUUCUCAUAAAUGGCCAGCCAUAUUGACAGUCAAUGGCAGCU--AAAGCGAAAGAAUACCAGU----GCUCGUAAUCGUCGUUUCUGCCGGCUCUGAUCUGAAGACCAUGGGAAACA
....(((((((..((((....)))).....((((((.((((((..--.((((((..((.(((....----....))).)).))))))))))))....))).)))......)))))))... ( -29.90)
>DroYak_CAF1 47261 115 + 1
ACCAUUCUCAUAAAUGGCCUAGCUUAUUGACAUUUAAUGUCGGCUUUAAGCUGAAAUAAUACACGUAUAAGCAAGUAGAAGUCUCCCUAAUUUGUUGAAAUCAG-----CAUGGGAAACU
.(((((......)))))....((((((............(((((.....)))))............)))))).......(((.((((.....(((((....)))-----)).)))).))) ( -28.05)
>consensus
ACAAUUCUCAUAAAUGGCCUAGCUUAUUGACAUUUAAUGUCAGCUU_AAGCUGAAAUAAUACACGUAUAAGCAAGUAGUAGUCUCUCCAACUGGUUGAGAUCUG_____CAUGGGAAACU
....(((((((.........(((((.((((((.....))))))....)))))..................((((((.............))))))...............)))))))... (-12.34 = -12.62 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:49 2006