Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,714,434 – 21,714,535 |
Length | 101 |
Max. P | 0.791878 |
Location | 21,714,434 – 21,714,535 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -8.88 |
Energy contribution | -9.76 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.34 |
Structure conservation index | 0.43 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21714434 101 + 23771897 UGUCUACUUUUUUUUUUGAAGUGGGCCCAUCCUCUGCAGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU---GCGACUGUA----UC------------ .(((((((((.......)))))))))........(((((.((((............(((((((.......)))))))...(....)...)---))).)))))----..------------ ( -22.20) >DroPse_CAF1 21933 119 + 1 UUUCUUCUUCUGUUUUUCAAGGCGGCCCA-CCUCUGCCGCCGCAGACUAUUUAACAAUUUUUACUACUACUAAAAAUUCCAGCAACAAACUCUGCUACUCUGAUGCUCUGCUGCUCUCCC ....................((((((...-.....))))))(((((.((((....((((((((.......))))))))..((((........)))).....)))).)))))......... ( -25.40) >DroSim_CAF1 629 100 + 1 UGUCUACUUUUUUUUUU-AAGUGGGCCCAUCCUCUGCCGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU---GCGACUGUA----UC------------ .((((((((........-))))))))........(((.(.((((............(((((((.......)))))))...(....)...)---))).).)))----..------------ ( -16.60) >DroPer_CAF1 21000 119 + 1 UUUCUUCUUCUGUUUUUCAAGGCGGCCCA-CCUCUGCCGCCGCAGACUAUUUAACAAUUUUUACUACUACUAAAAAUUCCAGCAACAAACUCUGCUACUCUGAUGCUCUGCUGCUCUCCC ....................((((((...-.....))))))(((((.((((....((((((((.......))))))))..((((........)))).....)))).)))))......... ( -25.40) >DroYak_CAF1 46746 99 + 1 UGUCUACUCUUUU--UUGAAGCGGGCCCAUCCUCUGCCGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU---GCGACUGUC----CC------------ .(((.........--......((((.......(((((....)))))..........(((((((.......)))))))))))(((.....)---)))))....----..------------ ( -14.50) >consensus UGUCUACUUUUUUUUUUCAAGGGGGCCCAUCCUCUGCCGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU___GCGACUGUA____UC____________ ...((((((.........))))))(((.....(((((....)))))..........(((((((.......)))))))...)))..................................... ( -8.88 = -9.76 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:48 2006