| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,709,337 – 21,709,435 |
| Length | 98 |
| Max. P | 0.756147 |
| Location | 21,709,337 – 21,709,435 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 98.63 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -21.97 |
| Energy contribution | -21.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21709337 98 - 23771897 AGCGCAGGAAUCGCCAGACAAAUUCAUAUUUUAUUGCCGCAACCAUGGCCGGGCCAAAGGCAUUAACAAACAAUGCCACGGCAACAACGGCCAACAAG .(((((((.....)).((.....)).........)).))).....((((((.(((...((((((.......))))))..))).....))))))..... ( -28.00) >DroSec_CAF1 48896 97 - 1 AGCGCAGGAAUCGCCAGACAAAUUCAUAUUUUAUUGCCGCAACCAUGGACG-GCCAAAGGCAUUAACAAACAAUGCCACGGCAACAACGGCCAACAAG .(((((((.....)).((.....)).........)).)))..........(-(((...((((((.......))))))..(....)...))))...... ( -22.90) >DroSim_CAF1 44304 97 - 1 AGCGCAGGAAUCGCCAGACAAAUUCAUAUUUUAUUGCCGCAACCAUGGACG-GCCAAAGGCAUUAACAAACAAUGCCACGGCAACAACGGCCAACAAG .(((((((.....)).((.....)).........)).)))..........(-(((...((((((.......))))))..(....)...))))...... ( -22.90) >consensus AGCGCAGGAAUCGCCAGACAAAUUCAUAUUUUAUUGCCGCAACCAUGGACG_GCCAAAGGCAUUAACAAACAAUGCCACGGCAACAACGGCCAACAAG ............(((.((.....))........((((((......(((.....)))..((((((.......)))))).))))))....)))....... (-21.97 = -21.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:44 2006